Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00049 ATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACCACTTACACCAAGGTGTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAAAGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTACGGATTTGTTACTTTTCGTGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTGTAATCGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACACCAAAGCATGGAGGAGGAGGAAGGAACTTTAGGGTCATGAGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCGGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTACAATGTTTATGGGTACTCTCCTTACTCGCAGGATTACACTTACCCCACGAGCTACTATGGTGTGTATGGAGGAGCAACAACACAGTACCCAGTTTATGGAAACGGAGCAGGAGGCATGATGACGGGTGCTGCTGCAGCGTTCTATCCATATCTTCAGTACGGAGAAGGAAGTGGTGGCGGCACCACCGGCGGCTACACTTCTGGGCAGGGTTATGGTGTGAACTACCCACCTCAGCTGTTTCAGTATTCTCCCATTGCTTCAACTGGTGGGTATGCTGCTCAGCACTATGGAACACCCATTTCTCTTGCACCTTCGCCTGCTTTGCAATCAGGCGTGACCATGGCTCTTCAAGCTCCAATTCCTCATCGCTAG 810 0.4901 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMSSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSQDYTYPTSYYGVYGGATTQYPVYGNGAGGMMTGAAAAFYPYLQYGEGSGGGTTGGYTSGQGYGVNYPPQLFQYSPIASTGGYAAQHYGTPISLAPSPALQSGVTMALQAPIPHR* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00049 269 Gene3D - 7 112 IPR012677 -
Rops3g00049 269 SMART rrm1_1 17 89 IPR000504 GO:0003723
Rops3g00049 269 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Rops3g00049 269 SUPERFAMILY RNA-binding domain, RBD 12 111 IPR035979 GO:0003676
Rops3g00049 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Rops3g00049 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Rops3g00049 269 PANTHER BOULE-RELATED 6 245 - -
Rops3g00049 269 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00049 Rops-Chr3 686842 691551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00049 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.81e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00049 - - aip:107629746 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00049 3 686842 691551 Rops3g00049 3 686842 691551 ECH