Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00044 ATGGCCAACAGTCCCTGTCTCTTTCACTTTTTCCAGTTCTTGGCAATGCTGTTATTCACTTCATACTCTATTTTCCCGCCTTGTGTGTCTCTAACATTGGAAACCCAAGCTCTTCTTCAGTTCAAGAACCATTTGAAGGACTCATTGAATTACCTGGGTTCCTGGAGTGAATCAGATTCTCCATGTGAGTTCTATGGAATTAGATGTGATCCAGCTTCTGGGAAAGTCACAGAAATCTCACTGGACAACAAGTCCCTCTCTGGTGACATTTTCCCTTCACTCTCAGTTCTGCAGAGCCTGCTAGTTCTGTCACTACCATCCAATTTAATTTCTGGAAAGCTTCCATCAGAAATAAGTAATTGTACCAACCTCAGAGTCTTGAATCTTACAGGAAATCAGCTGGTTGGACCAATCCCAGACTTGTCCAGGCTGAGAAACCTGCAGGTTCTTGATCTTTCAGCAAACTACTTCTCTGGCAGCATCCCCAGTTGGGTGGGGAGTCTAACTGGACTAGTTTCACTGGGTCTTGGAGAAAATGAATACAGTGAGGGTGAGATTCCAGAGACTCTTGGAAATCTGAAGAACTTGACCTGGCTCTATCTTGGTGGTTCCCATTTGATAGGAGAGATTCCAGAATCATTATATGAAATGGAGGCATTGGAGACACTGGATATTTCAAGAAACAAGATCTCTGGCACACTCTCTAGATCAATTTCCAAGTTAAAAAATATTTACAAGATGGAGCTCTTCGCAAATAATTTGACAGGAGAAGTCCCAGCTGAGCTTGCAAACCTCACCAACCTGCAGGAGATTGACCTTTCTGCAAACAATATGTATGGTAGGTTGCCAGAGGAAATTGGTAATATGAAGAACTTGGTTGTTTTTCAACTATATGAAAACAACTTTTCTGGAGAAATTCCTGCTGGATTTGGGGACATGCAACATCTCATTGGGTTCTCAATTTATAGAAACGGCTTCATTGGGATGATTCCAGAAAATTTTGGCCGATTTTCGCCGCTTGTGAGTATTGACATATCAGAGAATCAATTTTCAGGTGATTTCCCAAAGTTCTTGTGTGAAAGCAGGAAGTTGAGATTTTTGCTTGCATTGCAGAACAATTTTTCTGGGAATTTCCCCGAGTCTTATGTTGCATGCAAATCTCTAGAGAGATTTAGGATTAATAGAAACCGCTTATCTGGGAAAATTCCACACGAGGTTTGGGCACTTCCATATGTCAAAATACTTGATTTGGCTTATAATGATTTCACTGGCGAGGTATCTTCAGAAATTAGGTTTTCTACTAGCTTGAGTCAGATAGTTTTGATAAATAACAGGTTTTCAGGTAAGCTCCCATCAGATCTTGGCAAGCTGGTGAACTTGGAGAAGCTTTACTTGAGCAACAATAATTTCTCTGGTGAAATACCACCTGAATTGGGATCTCTGAAGCAGTTATCCTCTTTGCATTTAGAAGAGAATTCATTAACTGGATCAGTACCCACAGAACTGGGTCATTGTGCAAGGCTGGTGGACTTAAATCTTGCTTGGAATTCTCTATCTGGAAATATTCCCCAGTCAGTTTCACTTATGAGCTCATTGAACTCTCTTAATATATCTGGAAACAAACTTACAGGTTCTATTCCAGATGATTTAGAGACAATGAAACTAAGCTCGGTGGATTTTTCTGAAAACCTGCTATCTGGAAGAATACCATCTGGTCTTTTTATTATTGGTGGAGAGAGAGCTTTTCTTGGAAACAAGGGGCTGTGTGTTGATGAAAACCTAAAACCTTCCATGAATTCTGATTTGAAGATTTGTGCCAAAAATCATGGTCAGACAAGGGTCTTTGCTTATAAATTTGTCTTGATCTTTTTCACTGCTTTTATCTTTGTTGTTATTTTAGCTGGGTTGGTGCTTTTGAGTTGTAGAAGCCTCAAGCATGGTGCAGAGAAAAACTTCCAAGGTCAAAAGGAAGCACATCAAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATTGATGCTGATGAAATATGTAATTTGGATGAAGATAATTTAATTGGCAGCGGTGGTACAGGAAAGGTTTATCGAGTGGAGTTGAGGAAAAATGGTGCCATGGTGGCTGTAAAGCAACTAGAGAAAGGAGGTGTGAAGATTTTAGCTGCAGAGATGGATATTTTGGGGAAAATCAGGCATAGAAACATACTTAAACTTTATGCTTGTTTACTTAAAGGAGGATCCAACCTTTTAGTGTTTGAGTACATGCCAAATGGTAATCTTTTTCAAGCTCTTCACAGACAGATAAAAGATGGGAAGCCAGAATTGGATTGGAACCAGAGGTATAAGATTGCTCTGGGCGCTGCAAAAGGAATTGCCTATTTACACCATGACTGTTGTCCACCTATTATTCACAGAGATATTAAACCCAGCAACATTTTGCTTGATGAGGATTATGAGCCAAAAATTGCTGACTTCGGTATTGCAAGGTTTGCAGAAATTTCTGATAAGCAGTTGGGTTATAGCTGTCTTGCCGGCACACTTGGTTATATTGCACCAGAACTCGCTTATACAATTGAGATCACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTGCTATTAGAGTTAGTGTGTGGCAGAGAACCCATTGAAGAGGAATATGGAGAAGCAAAGGACATTGTTTATTGGGTTTCAACTCATCTCAATGACCGTGAAAGTATTCTCAACATTCTTGATGATAGGGTGGCATTGGAATCTGCTGAAGATATGATAAAAGTCTTAAAGATTGCTATTAAGTGCACCACTAAGCTTCCATCTTTGCGCCCTACCATGAGAGAGGTTGTCAAGATGCTTATTGGTGCTGAACCTTGCACATTGAAATCTACAGACTGCGATCTTTACAAAGATGCAAAGGCATTTCTCTAG 2922 0.4008 MANSPCLFHFFQFLAMLLFTSYSIFPPCVSLTLETQALLQFKNHLKDSLNYLGSWSESDSPCEFYGIRCDPASGKVTEISLDNKSLSGDIFPSLSVLQSLLVLSLPSNLISGKLPSEISNCTNLRVLNLTGNQLVGPIPDLSRLRNLQVLDLSANYFSGSIPSWVGSLTGLVSLGLGENEYSEGEIPETLGNLKNLTWLYLGGSHLIGEIPESLYEMEALETLDISRNKISGTLSRSISKLKNIYKMELFANNLTGEVPAELANLTNLQEIDLSANNMYGRLPEEIGNMKNLVVFQLYENNFSGEIPAGFGDMQHLIGFSIYRNGFIGMIPENFGRFSPLVSIDISENQFSGDFPKFLCESRKLRFLLALQNNFSGNFPESYVACKSLERFRINRNRLSGKIPHEVWALPYVKILDLAYNDFTGEVSSEIRFSTSLSQIVLINNRFSGKLPSDLGKLVNLEKLYLSNNNFSGEIPPELGSLKQLSSLHLEENSLTGSVPTELGHCARLVDLNLAWNSLSGNIPQSVSLMSSLNSLNISGNKLTGSIPDDLETMKLSSVDFSENLLSGRIPSGLFIIGGERAFLGNKGLCVDENLKPSMNSDLKICAKNHGQTRVFAYKFVLIFFTAFIFVVILAGLVLLSCRSLKHGAEKNFQGQKEAHQKWKLASFHQVDIDADEICNLDEDNLIGSGGTGKVYRVELRKNGAMVAVKQLEKGGVKILAAEMDILGKIRHRNILKLYACLLKGGSNLLVFEYMPNGNLFQALHRQIKDGKPELDWNQRYKIALGAAKGIAYLHHDCCPPIIHRDIKPSNILLDEDYEPKIADFGIARFAEISDKQLGYSCLAGTLGYIAPELAYTIEITEKSDVYSFGVVLLELVCGREPIEEEYGEAKDIVYWVSTHLNDRESILNILDDRVALESAEDMIKVLKIAIKCTTKLPSLRPTMREVVKMLIGAEPCTLKSTDCDLYKDAKAFL* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00044 973 FunFam Probable inactive receptor kinase RLK902 31 188 - -
Rops3g00044 973 FunFam Receptor-like protein kinase HSL1 295 598 - -
Rops3g00044 973 FunFam Leucine-rich receptor-like protein kinase family protein 670 753 - -
Rops3g00044 973 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Rops3g00044 973 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Rops3g00044 973 CDD STKc_IRAK 686 950 - -
Rops3g00044 973 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Rops3g00044 973 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Rops3g00044 973 FunFam Leucine-rich repeat receptor protein kinase EMS1 210 294 - -
Rops3g00044 973 Gene3D Phosphorylase Kinase; domain 1 650 753 - -
Rops3g00044 973 ProSiteProfiles Protein kinase domain profile. 680 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00044 973 SUPERFAMILY Protein kinase-like (PK-like) 677 950 IPR011009 -
Rops3g00044 973 SUPERFAMILY L domain-like 58 375 - -
Rops3g00044 973 Pfam Protein kinase domain 682 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00044 973 FunFam leucine-rich repeat receptor-like protein kinase TDR 754 962 - -
Rops3g00044 973 Gene3D Transferase(Phosphotransferase) domain 1 754 963 - -
Rops3g00044 973 Gene3D Ribonuclease Inhibitor 185 322 IPR032675 -
Rops3g00044 973 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Rops3g00044 973 Gene3D Ribonuclease Inhibitor 32 184 IPR032675 -
Rops3g00044 973 Pfam Leucine rich repeat 145 206 IPR001611 GO:0005515
Rops3g00044 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 801 813 IPR008271 GO:0004672|GO:0006468
Rops3g00044 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 218 951 - -
Rops3g00044 973 SMART serkin_6 680 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00044 973 SUPERFAMILY L domain-like 283 573 - -
Rops3g00044 973 Gene3D Ribonuclease Inhibitor 323 510 IPR032675 -
Rops3g00044 973 Gene3D Ribonuclease Inhibitor 511 589 IPR032675 -
Rops3g00044 973 Pfam Leucine Rich repeat 120 134 IPR001611 GO:0005515
Rops3g00044 973 SMART LRR_typ_2 265 289 IPR003591 -
Rops3g00044 973 SMART LRR_typ_2 529 553 IPR003591 -
Rops3g00044 973 SMART LRR_typ_2 457 480 IPR003591 -
Rops3g00044 973 SMART LRR_typ_2 97 121 IPR003591 -
Rops3g00044 973 SMART LRR_typ_2 217 241 IPR003591 -
Rops3g00044 973 SMART LRR_typ_2 481 505 IPR003591 -
Rops3g00044 973 SMART LRR_typ_2 144 168 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00044 Rops-Chr3 652371 657212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00044 24 962 Receptor kinase-like Gene Family AT1G72180 57.789 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops3g00044 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00044 - - gmx:100789704 1627.84