Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00043 ATGGCTTTTCTCCTTAACCACTCCTTTTGCTACCTCTTGTACTTCCTTTCTTCTCTACCAATCATATATGCACTTTCAACAGTTTCCATTTCTGAAACTTCCAACCAAACATTTATCTGTGCCTTACAACATCCAAACCAACAAGGACAGTCAAACCTTAACTGTACTAGCTTTCCTCCTGGTGTTGGACTAGAAATGAATCCCAATGTTTCCTATTCTGAGATTGTGGGTGGCAATGGGTTTCTATGTGCATTAAGGCCACCATCTTCTTCTACTTCCATCATGGGCTGTTGGAGATTCTCTGCTAACGCTACTAATGTTCCCTATAAGCGTATCTACCGTGGACCCGTTATTGAAAGCATTGAAGGTGGGAATTCCCATGTTTGTGGTCTTGTAAGAGGGAATGATGGGGTTGACCTTGAGTGTTGGCAATGGTCTCACTTCAATTCAAGCATGGGCAGGAACATGTCAAGCATTGCAGTGGGGGAGGATTTTGTATGTGGCTTATCAGAAACTGGGAAAGTTACTTGCATTGGGAGTGACACTAGAGTTGTTGGGCATGAGCCTGGGCCTGATGGAAATTACTCTGTAGTTGCAGCTGGGTTCAGGCATGCTTGTGCTATCTCTCTTGATGGTAGCCTGGATTGTTGGGGGGACATGGTGGGTGAGAAACCACAAGGGAGGTTCATTTCTTTGGCGTTGGGAGAGAATCGAAGTTGCGCACTTGGGGATAATGGAATAGTTATTTGTTGGGGGTCGAATAATTTCAGCATGCCACAGAGATTGCAAGGCACTTTTTTTGAAGCAATTGCAGCAAAACGAAGTGTTTTCTGTGGAGTTGTGTCTTCTAATTATTCTTTGCTTTGTTGGGGTACTGAAATTGTTGAGTCAAATACCAAGGTGTTTGATAATGTCCTCCCAGGACCTTGTAGGAATGAATGTCCATGCGGGCCCTTGTCAGATTCTGCCAAACTCTGTAACCCACCGGCCATCATTTGCAAGCCTTGTCCACCAGCAGTCGAATCTCCTCCATTGGAACCATCATCACCCCAACCAGCATCAGAAAGTGGTTGGAGCAATAAAATGGTGGCATTTCTGGTGGTTGGATGTGTTGGTTGCAGTTCCTTGTTGTTAGTCTTGGCTTTCTTCCTTTACAAGCACTGCAAAGGCAGAGGATGCCGTGTCCATGACTCTGGCCGATTGGATGAGCCTGAGGGTGAACCAGAAGCTCCAGCTGTCCCTGCAGTTTTGGAGAAGCGTTTGAGCCATGTAATTAGCATTGGAAATGGGGGGAGCCATTTGGAGGAATTTTCCCTGCAAGTACTGCTCCAAGCCACTGACAATTTCTCTGAGGAGAATAAAATTGGAACAGGGAGCTTTGGTTCAGTGTATCATGCCACACTGGAATATGGGAAGGAAGTTGCTATAAAAAGAGCCGAAATCTCGTCCACTTCTGCATCCTATGCAGTTTTGGGTGGCACCAAAAGGCAAGAAGACAAAGACAATGCCTTTGTGAATGAGCTTGAATCTCTATCAAGACTCCACCACAAGAATCTAGTTCGGTTACTTGGTTTCTATGAAGACATGAATGAACGCATTTTGGTGTATGAGTATATGAACAATGGCAGCCTAAGTGATCATCTTCACAAGTTCCAAAGTTCTGCTCTCATGTCATGGGCAGTTCGCATAAAGGTAGCTCTAGATGCTGCCAGAGGCATAGAGTATCTACACCAATATGCCACTCCACCAATCATTCATCGTGACATTAAGTCATCAAACATATTATTGGATGCCAAGTGGACGGCCAAAGTGTCTGATTTTGGACTATCATTGATGGGTCCTGAAGATGAGGAGTCCCACCTTTCACTTCTAGCAGCTGGCACCGTTGGCTACATGGACCCTGAATACTATAGACTTCAGCTTTTGACCACAAAGAGTGACGTGTACAGCTTTGGAGTTGTTTTGCTAGAACTCCTATCTGGGCTAAAAGCCATCCATAAAAACGAGAATGGGGTGCCAAGAAATGTAGTAGATTTTGTGGTACCCTTCATTCTTCAAGATGAAATTCACAGGGTTTTGGACCCAAAAGTGCCACCCCCAACACCATTCGAGATAGAGGCCGTGGCGTTTGTGGGTTATTTGGCATCAGATTGTGTTCGTCTAGAAGGTCGAGATCGACCGACAATGAGTCATGTTGTAAATAACTTGGAAACGGCACTGGCTGCGTGTTTAGCCCAACCAATACTTTCAAGGTCCACCACTGCTTCTTCGGACTAG 2277 0.4515 MAFLLNHSFCYLLYFLSSLPIIYALSTVSISETSNQTFICALQHPNQQGQSNLNCTSFPPGVGLEMNPNVSYSEIVGGNGFLCALRPPSSSTSIMGCWRFSANATNVPYKRIYRGPVIESIEGGNSHVCGLVRGNDGVDLECWQWSHFNSSMGRNMSSIAVGEDFVCGLSETGKVTCIGSDTRVVGHEPGPDGNYSVVAAGFRHACAISLDGSLDCWGDMVGEKPQGRFISLALGENRSCALGDNGIVICWGSNNFSMPQRLQGTFFEAIAAKRSVFCGVVSSNYSLLCWGTEIVESNTKVFDNVLPGPCRNECPCGPLSDSAKLCNPPAIICKPCPPAVESPPLEPSSPQPASESGWSNKMVAFLVVGCVGCSSLLLVLAFFLYKHCKGRGCRVHDSGRLDEPEGEPEAPAVPAVLEKRLSHVISIGNGGSHLEEFSLQVLLQATDNFSEENKIGTGSFGSVYHATLEYGKEVAIKRAEISSTSASYAVLGGTKRQEDKDNAFVNELESLSRLHHKNLVRLLGFYEDMNERILVYEYMNNGSLSDHLHKFQSSALMSWAVRIKVALDAARGIEYLHQYATPPIIHRDIKSSNILLDAKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQLLTTKSDVYSFGVVLLELLSGLKAIHKNENGVPRNVVDFVVPFILQDEIHRVLDPKVPPPTPFEIEAVAFVGYLASDCVRLEGRDRPTMSHVVNNLETALAACLAQPILSRSTTASSD* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00043 758 CDD STKc_IRAK 455 737 - -
Rops3g00043 758 ProSitePatterns Protein kinases ATP-binding region signature. 455 477 IPR017441 GO:0005524
Rops3g00043 758 SMART serkin_6 449 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00043 758 Gene3D Transferase(Phosphotransferase) domain 1 539 746 - -
Rops3g00043 758 Gene3D - 69 305 IPR009091 -
Rops3g00043 758 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 181 746 IPR044815 GO:0004674
Rops3g00043 758 Pfam Regulator of chromosome condensation (RCC1) repeat 198 219 - -
Rops3g00043 758 Pfam Regulator of chromosome condensation (RCC1) repeat 230 256 - -
Rops3g00043 758 SUPERFAMILY Protein kinase-like (PK-like) 430 736 IPR011009 -
Rops3g00043 758 ProSiteProfiles Protein kinase domain profile. 449 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00043 758 Pfam Protein kinase domain 450 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00043 758 SUPERFAMILY RCC1/BLIP-II 109 293 IPR009091 -
Rops3g00043 758 FunFam Serine/threonine-protein kinase-like protein CCR4 539 754 - -
Rops3g00043 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Rops3g00043 758 Gene3D Phosphorylase Kinase; domain 1 426 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00043 Rops-Chr3 646496 649079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00043 23 754 Receptor kinase-like Gene Family AT5G47850 52.660 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Rops3g00043 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00043 - - pvu:PHAVU_011G003100g 1100.12