Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00041 ATGGCCCAGCAGTCATCCAGGCTTCAGCGGTTGCTTACTCTATTGGACACTGGCTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACATCCTCAAGATTTAAACAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAATTGGGATACAAGAGTTTCAGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGTCTGAATGAACTTATTGCTTCTGTTGTATCAAAAATGTCCGAGGATGGGATATCCTGTAGTGTTGAGGATCTGTGTGCATGGCCTTATCTACAATCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCGGGAGGACAGGAATATGACATTGGAAATGATAACATAAAGAACCCAAAGGAACGACTGGTTCGCCAGAAGCAAAATCTCCGACGCCGATTAGGTTTGGATGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCAGACTCACATTTCAATGGAATAGATTATAGAGTTTTTACATCTTGTTCTGTTCATAACATCCAGCAAATGGTTTCAAATATGGTTCCTAGTGTTAAATCCAAGTGGCCCAGTGCAAGAGAACTGAATCTTTTAAAGCGCAAAGCAAAAATAAACTCAAAGGACCAAACAAAAAGCTGGTGTGAAGATGGAAGTACAGAGGCATCAGGTGCTCAACATTTGACTTCAACAGGCACATGTCCTGATTCAGTAAATTACAGCCAGGCATTCATGGATGTCAATCATGATGAAGATGGCTCTGAGCATGATGGGGATGGACAATGGCCTTTCCATACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGGCATGGTAGCGTGATGGCATTGAGGGAGATTTTGACACATCAAGGTGCTTCTGCTGGAGTATTTAAACATGATTCACGCTTGGGTGGGGCCTTGGTTGTTGAATTAGAAGAAAAAAGTGTATCAAATATATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTGTCAGCAGATGAGTTTGTATCAAACTTGAAGAAGCCAAAACTTGAAGATGTATCATCCTCGACCTCTAGGGATAGCGTGATGACTTGCAGCAATGAAGGTGATACTGAAATCAGCATTAGTCCTGAAACCCATGGATGCACTATACCTTTGGATTACGGGAATGGGAAATTTAATGGTAATTCTGTTGACATGGATCTGGAATTTCATTCTGATGGTTTACATGATACAAGCAAGGAACCTGTTAATATGGCAGAGCAGAAGGGTTATTCTGATGACAATAAGATTCCCTCTGGAAATGCTAATGTGCTGAGAAATCTTCCTCAGAATTGTGAGCTGATGAACTTGGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGTGTCTTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCAGCATTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCGGTGCGGCAGGAGATGCTTTCCAATTTGCTTGGATGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCTGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTGCAGGGTCAAACATTGCATTCAATTGTGATGTTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCAACTAGCAGTGTGATGAATTTACTAGCAGAAATCTATTCTCAAGAAGAGATGGTCCCGAAGATGTATAAAGTTTTTAAATTGGGAGACAAGGAAATAGAAAATGGAGTTGGTGGTTGTGGTGATGATGATGGAGAAGAAAATCCTTATGTGCTTTCAACTTTGGCACCACGTTTGTGGCCCTTCATGAGGCATAGCATCACATCTGTCCGTTATTCAGCAATACGCACTCTGGAGAGGCTACTCGAAGCTGGATATAAGAGAAGCTTATCTGAGCTGTCTAGTGCTTCATTTTGGCCCTCTTTTATATTTGGAGATACACTTAGAATTGTGTTCCAGAATTTGCTAATGGAAACAAATGAGGATATTTTACAGTGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACTTGGAGACAGCTGCAAGGTCTTACATGACTTCTTGGATAGAACTTGCATCTACACCATTTGGTTCCGCACTAGATGCCTCAAAGATGTATTGGCCTGTTGCCTTTCCACGAAAAAGTCAGTTTAGAGCAGCAGCTAAAATGAGAGCTGCAAAGATTGAAAATGAATATGGTGGGGATCTTGGTCTCGAGTCTACCAAAGCAACTATTCCACAAGATAGAAATGGAGATGTTTCTGTGAGTTCTGTTAAGATAGTTGTTGGTGCTGATGTGGACACTTCGGTAACTCATACTCGGGTGGTTACAGCAACTGCTTTGGGAATTTTTGCTTCTAAGTTGCCAGAGGGTTCTTTAAAATATGTGATTGATCCACTGTGGAGCTCTCTAACCTCTTTGTCCGGTGTCCAACGCCAGGTTGCATCGATGGTACTTATTTCTTGGTTCAAGGAGATTAAGAACAGGAATTCATCTAAAAACCTTGATGGTATTCCTGCTGCCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGGTTCACTTCTTCCTTATGCTGAACTTTCAAGAACTTATTCAAAGATGCGTAGTGAGGCTGCTCAATTGCTAAATGCTGTCAAGTCTTCTGGTATGTTTAATGAGTTACTGACAACTACCAAAATTGAGTTGGATAGCTTGAGTGTGGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCATTGTATAATGATAGTTCTGCAAATGAATCTCTGGGAAAGAACACTATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTCACATCAGCAGTTGCAGCAGCAGTTGTCTGGATGTCTGAATTTCCTACACGTCTCACCCCTATCATTTTGCCTTTGATGGCTTCAATCAAACGAGAACAGGAGGAAATACTGCAAATGAAGTCAGCAGAGGCCCTGGCTGAGCTAATGTATCACTGTGTTGCACGTAGACCCTGCCCCAATGATAAATTAATTAAAAATATATGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCTCAAGCTAAATCCATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTAGAACTCCTGTGAGCAAACACAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGATCGAAGGTGGAGGGCTTTATAAGTAGACGTGGATCTGAGCTATCATTGAGGCTTCTGTGTGAGAAGTTTGGTGCTTTATTATTTGACAAACTTCCTAAGCTGTGGGATTGTCTTACTGAGGTGCTTAAGCCAAGCTCCTCTGAATCTCCACTTGTCACTAATGAAAAGCAAGTTACCGTGGATGTTGAGTCTGTTAGTGATCCTCAAACCTTGATTAACAATATTCAGGTGGTGCGATCTATTGCTCCTTTGTTGAATGAAGAGTTGAAGCCAAAACTTTTGACACTTCTCCCATGCATTTTCAAATGTGTTCAGCATTCTCACGTTGCAGTTAGGTTAGCTGCTTCACGCTGCATTACTTCCATGGCCCGATCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAAAGGCTATCCCTATGTTGGAAGACGCATCATCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTTTTGGTGGTTCCACTTCTAAGATGCATGAGTGATTGTGATCAGTCTGTTAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCGCGAGGCCTTCCTCAACCAATTGGATTAGGGGAAGGTATATCTAGAAATGCAGAAGACTTACATTTTCTGGAGCAACTACTTGACAACTCCCATATTGAAGATTACAAGTTATGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTGTGTGATGACATGGGGCTTGGTAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAACTTCAAATGGGAGTGAGGAACTTCTGCCATCTTTAATTATTTGCCCATCAACTCTTGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTTGGTTATATCTAGTCTTCAGTATGTTGGTTCTGCCCAGGAGCGAATGCTTCTTCGAGATAATTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTGCTGTGGAATTATTGCATTTTAGATGAAGGACATATAATCAAGAATGCTAAGTCTAAAGTTACGCATGCTGTAAAGCAGCTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCGATACAGAATAACATAATGGATCTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTAGGAACAGATAGACAGTTCCAAGGCATGTACGGAAAACCACTTTTAGCTGCTAGAGATCCAAAGTGCTCTGCTAAGGATGCTGAAGCAGGAGCGCTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGTAGGACAAAGAATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAACTTAAACTTTATGAGCAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTGTTGTATCAACGAATGACTCAGCTGCTGCTGAAGGAAGTAGCAGTTCTACTAAAGCATCTTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTATGTAGTCATCCATTGCTCGTCACTGGTGAGAAGATTCCGGAATCACTCTCTATCAGTCTCTCAGGACTGTTGCCTGCTGGCTCTGATGTCATTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCTTGAGATTCTTGAAGAATGTGGAATTGGAGTTGATGCTTCAGGTTCTGAGGGTGCTGTTAGCATTGGGCAGCATAGGGTCCTGATATTTGCTCAACATAAGGCTTTCCTGGACATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGTGTCACATACTTGCGGCTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGATCCTACCATTGACGTGTTGCTGCTTACAACACACGTGGGTGGGCTTGGTTTGAACCTGACATCGGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCGATGCGCGATCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGATATCTCCAAGAAGGGGGCTTCTGTCACGAAGAATTCAGAGGGCAGCTCTGACGGAGACACTAAATTAGTAGGCAGTGGGAAGGGGTTGAAAGCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAGTCTGAGTCAATTCTTAGCAAAGCTTAATGGCTAA 6153 0.4162 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLNSLLKKVSQYLRSKNWDTRVSAAHAIGSIAENVKHISLNELIASVVSKMSEDGISCSVEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLMAHKSDSHFNGIDYRVFTSCSVHNIQQMVSNMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGSTEASGAQHLTSTGTCPDSVNYSQAFMDVNHDEDGSEHDGDGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKHDSRLGGALVVELEEKSVSNILKREREIDLNMQVSADEFVSNLKKPKLEDVSSSTSRDSVMTCSNEGDTEISISPETHGCTIPLDYGNGKFNGNSVDMDLEFHSDGLHDTSKEPVNMAEQKGYSDDNKIPSGNANVLRNLPQNCELMNLVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSNLLGCVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMVPKMYKVFKLGDKEIENGVGGCGDDDGEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSLSELSSASFWPSFIFGDTLRIVFQNLLMETNEDILQCSERVWSLLVQCSVEDLETAARSYMTSWIELASTPFGSALDASKMYWPVAFPRKSQFRAAAKMRAAKIENEYGGDLGLESTKATIPQDRNGDVSVSSVKIVVGADVDTSVTHTRVVTATALGIFASKLPEGSLKYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKNRNSSKNLDGIPAALKDWLLDLLACSDPAFPTKGSLLPYAELSRTYSKMRSEAAQLLNAVKSSGMFNELLTTTKIELDSLSVDDAIGFASKIPALYNDSSANESLGKNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSICSMESIDDQGLLSFRTPVSKHKSKVHVLAGEDRSKVEGFISRRGSELSLRLLCEKFGALLFDKLPKLWDCLTEVLKPSSSESPLVTNEKQVTVDVESVSDPQTLINNIQVVRSIAPLLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSMARSMTVKVMGAVVEKAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTSNGSEELLPSLIICPSTLVGHWAFEIEKYIDVLVISSLQYVGSAQERMLLRDNFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTHAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGMYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKNEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRVKQEMSSVVSTNDSAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVTGEKIPESLSISLSGLLPAGSDVISELHKLHHSPKLVALLEILEECGIGVDASGSEGAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASADISKKGASVTKNSEGSSDGDTKLVGSGKGLKAILGGLEELWDQSQYTEEYSLSQFLAKLNG* 2051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00041 2050 CDD SF2_C_SNF 1801 1943 - -
Rops3g00041 2050 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1804 1978 IPR001650 -
Rops3g00041 2050 CDD DEXHc_Mot1 1454 1686 IPR044078 GO:0005524
Rops3g00041 2050 Pfam Domain of unknown function (DUF3535) 783 1237 IPR022707 -
Rops3g00041 2050 Gene3D - 1696 2011 IPR027417 -
Rops3g00041 2050 MobiDBLite consensus disorder prediction 248 267 - -
Rops3g00041 2050 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Rops3g00041 2050 Gene3D - 1098 1412 IPR011989 -
Rops3g00041 2050 SMART helicmild6 1846 1932 IPR001650 -
Rops3g00041 2050 FunFam TATA-binding protein-associated factor BTAF1 508 688 - -
Rops3g00041 2050 FunFam TATA-binding protein-associated factor 172 1696 2013 - -
Rops3g00041 2050 Gene3D - 502 688 IPR011989 -
Rops3g00041 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1687 1988 IPR027417 -
Rops3g00041 2050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1433 1686 IPR027417 -
Rops3g00041 2050 Pfam Helicase conserved C-terminal domain 1832 1932 IPR001650 -
Rops3g00041 2050 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1424 1685 - -
Rops3g00041 2050 Pfam SNF2-related domain 1472 1768 IPR000330 GO:0005524|GO:0140658
Rops3g00041 2050 Gene3D - 4 98 IPR011989 -
Rops3g00041 2050 Coils Coil 984 1004 - -
Rops3g00041 2050 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1466 1636 IPR014001 -
Rops3g00041 2050 FunFam TATA-binding protein-associated factor BTAF1 1201 1412 - -
Rops3g00041 2050 Gene3D - 1427 1685 IPR038718 -
Rops3g00041 2050 MobiDBLite consensus disorder prediction 251 267 - -
Rops3g00041 2050 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2049 IPR044972 GO:0003677|GO:0016887|GO:0017025
Rops3g00041 2050 SMART ultradead3 1450 1644 IPR014001 -
Rops3g00041 2050 SUPERFAMILY ARM repeat 6 1493 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00041 Rops-Chr3 618034 638357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00041 1449 1987 RAD5 or RAD16-like Gene Family AT1G02670 26.981 7.53e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops3g00041 DUF3535 2.2e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00041 K15192 - gmx:100777977 3602.37