Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00026 ATGATGCGACCCACCTCTGGCATGGCCGCAAGCTGGTTAGAAGAAGTAGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGCCCTCATCCTTAACCTTCACTCAGCTCCTTTCTTCCGCCCCCTCAACTCCCAACTCTCTCTTTCCCTCTCAACAACAATACTCTTCCATCTACCAACCTTCACCCACCATCGCCCAGGAATTTGAGCAGAGCGGTAAAGCACCTAACATGAAAATGGACAATATTTTAAAGGATTCGATGCCTTGTAGGATTCGGGCAAAGCGTGGCTGTGCTACGCATCCAAGGAGCATTGCTGAAAGGGTTCGGAGGACTCGTATCAGTGACCGAATAAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACGAATACTGCAGCCATGCTAGATGAGGCGGTAGCTTATGTAAAGTTTCTACAAAAGCAAATTGAGGAACTATCAGAGCACCAACGGAGGTGTAAATGTGAGGTTCAAGAGTAA 513 0.4639 MMRPTSGMAASWLEEVDEEEEEEEEEEEEEPSSLTFTQLLSSAPSTPNSLFPSQQQYSSIYQPSPTIAQEFEQSGKAPNMKMDNILKDSMPCRIRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAAMLDEAVAYVKFLQKQIEELSEHQRRCKCEVQE* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00026 170 Gene3D - 101 170 IPR036638 GO:0046983
Rops3g00026 170 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 164 - -
Rops3g00026 170 MobiDBLite consensus disorder prediction 13 32 - -
Rops3g00026 170 FunFam Transcription factor bHLH130 family 101 169 - -
Rops3g00026 170 Coils Coil 140 170 - -
Rops3g00026 170 MobiDBLite consensus disorder prediction 1 53 - -
Rops3g00026 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 168 IPR036638 GO:0046983
Rops3g00026 170 Coils Coil 9 30 - -
Rops3g00026 170 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983
Rops3g00026 170 SMART finulus 106 156 IPR011598 GO:0046983
Rops3g00026 170 MobiDBLite consensus disorder prediction 33 53 - -
Rops3g00026 170 Pfam Helix-loop-helix DNA-binding domain 105 151 IPR011598 GO:0046983
Rops3g00026 170 CDD bHLH_AtbHLH_like 105 158 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00026 Rops-Chr3 447756 451668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00026 72 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 69.608 3.25e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g00026 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00026 - - vum:124835640 172.555