Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00021 ATGGCGCAGCGGCAGGAACCATGTGACAGCGAAGGTGTGTGTATGGTATGCAAAGGTCGGCCTGCAGAGGAAGAGAAGCTCAACTGCTTCACCTGTTGCTCACCATGGCACGGGGCTTGTCTGGCTATCCTTCCACCCACCCTCGCCAGCACCACTCATTGGGTCTGTCCAGATTGCTCCAACCTCACATCAATAACCCGTAAGGATAAGGATGATGATGATGATGATGGAGATGGACATAAAAATCTGGTGGCTGCCATGCTGGCTGTGGAGGCAGATACTTCTCTCACCCAACAACAGAAGGCCAGAAAACGCCAACAACTCATCACCAGAAACTCTGCTGTTGCTGCTGATGCACCAGAAGAAGAAGAAGACAACGAGGACAACAACAAGAACATGTCTGTATCTGATATTCTCACTCAGAATCTCAACTGCTCCATCTGTATTCAATTGCCGGAGAGGCCTGTCACGACTCCGTGTGGGCACACTTTCTGTCTCAAGTGCTTTGAGAAATGGATTCGGCAAGCGAAAAGAACGTGTGCCAAGTGCAGGCAGAGTATCCCTCCCAAAATGGCGAGCCAGCCCCGTATCAATCCTGCAATGGTATTTGCCATTCGAATGGCGAGGGCCTCCAACAACAGAAACAACAATGTTGGAGGAAGGCCCTTCGGTGCTTATCAATACGTGCATAACCAAGATAAACCCGACCAGCCATGTACCACCGAGCGTGCACAGAGGAATGGTCGTGCAAATGCCGCAAGTGGAAAGATCTTTGTGACCGTGCCTCTTGATCATTTTGGTCCAATCACAGCAGAGAATGACCCTATACGGTATCAGGGTCTGCTGGTTGGTGAATCCTGGCCAGACAGGCAGGAGTGCAGGCAATGGGGGGCTCACTTCATACCTATTGGAGGCATTTGTGGACAGTCAAATCATGGTGCCCAATCTGTTGTTCTCTCTGGTGGTTATGTTGACGATGAAGATCATGGAGAATGGTTTCTCTACACTGGAAGCGGCGGGAAGGATCTAAGTGGCAATAAACGCACCAACAAGGAACACTCTTCTGACCAGCAGTTTGAAAGGTGCAACCGTGCACTCCTGCTTAGTTGTCTCAAGGGTTATCCCGTTCGGGTTGTGAGATCTCACAAAGAGAAGCGATCCTCATATGCCCCTGAGCATGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGTTGGCAGGTAGCAGGGAAGCAGGGTTTCAAAGTTTGCCGGTTTCTATTCGTTAGATGTGACAATGAACCTGCCCCTTGGACAAGCGATGATCGTGGAGATAGGCCCAGACCCTTGCCAGTGATTCGTGAGCTGAAAAAGGCTACAACCATACATGAAAGGACCGAAACTCCATCTTGGGATTTTGATGAGGAAGATTCTTGTTGGAAATGGAAGAAACCACCTCCTCCCAGCAGAAAGAAGGTAAAAACTGAGGAATACGCAGAGATGGAGATGCCAAGGCCAAGGCCAAGTACAGAGACAAGGAAATTCCAAATTATGTCAATCAAGGAAAACTTGCGGACAGGGTTCTCGTGCCTGATATGCAGGCAGGTTATGGTTTCACCAGTGACAACACCATGTGGTCACAATTTCTGCAAGTCATGTTTGGAAGGTGCATTTGCTGGTCAGGCTTTTGTGAAAGAAAGGAGCAGGGGTGGGAAAACGCTTCGTTCCCAGAAAAATGTGATGAAATGTCCATCTTGCCCTACTGACATCTCTGATTATCTTCAGAACCTTAAGGTTGATATACATTTGAAGAATGCGATTGAGTCACTGAAAGCCAAGGCTGAAGAAAATGGAGAATCACTGGAGTCAGATAAGGATGAAGATACTATTGGCTCAGTGGACAAAAATTCTGCAGAGGAGTTGAATGGTTCACCTGAAGGATCTGACGTGGGTGAGCTTAAAGTGACCAATAAGGCGCCAAATCCAGCAGTGAAGCGCAATGTGAAGAGAAAGAAAACCGGTTCTAGCGAACAATTGCCTGAAAAGGGTGATGTTAAGATGGCTAAAGGGGGTAAAAAATCCAGAAAGGCTGAGAAAGCAGTGGATGAAGAAAATGATTCTCCATCAAGTCCTCTCAGTCTGCCATCAGATCATGATTGA 2142 0.4776 MAQRQEPCDSEGVCMVCKGRPAEEEKLNCFTCCSPWHGACLAILPPTLASTTHWVCPDCSNLTSITRKDKDDDDDDGDGHKNLVAAMLAVEADTSLTQQQKARKRQQLITRNSAVAADAPEEEEDNEDNNKNMSVSDILTQNLNCSICIQLPERPVTTPCGHTFCLKCFEKWIRQAKRTCAKCRQSIPPKMASQPRINPAMVFAIRMARASNNRNNNVGGRPFGAYQYVHNQDKPDQPCTTERAQRNGRANAASGKIFVTVPLDHFGPITAENDPIRYQGLLVGESWPDRQECRQWGAHFIPIGGICGQSNHGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKEHSSDQQFERCNRALLLSCLKGYPVRVVRSHKEKRSSYAPEHGVRYDGIYRIEKCWQVAGKQGFKVCRFLFVRCDNEPAPWTSDDRGDRPRPLPVIRELKKATTIHERTETPSWDFDEEDSCWKWKKPPPPSRKKVKTEEYAEMEMPRPRPSTETRKFQIMSIKENLRTGFSCLICRQVMVSPVTTPCGHNFCKSCLEGAFAGQAFVKERSRGGKTLRSQKNVMKCPSCPTDISDYLQNLKVDIHLKNAIESLKAKAEENGESLESDKDEDTIGSVDKNSAEELNGSPEGSDVGELKVTNKAPNPAVKRNVKRKKTGSSEQLPEKGDVKMAKGGKKSRKAEKAVDEENDSPSSPLSLPSDHD* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00021 713 MobiDBLite consensus disorder prediction 478 506 - -
Rops3g00021 713 Pfam SAD/SRA domain 278 427 IPR003105 -
Rops3g00021 713 ProSiteProfiles Zinc finger RING-type profile. 145 184 IPR001841 -
Rops3g00021 713 MobiDBLite consensus disorder prediction 94 113 - -
Rops3g00021 713 CDD RING-HC_ORTHRUS_rpt1 142 188 IPR047498 -
Rops3g00021 713 SMART ring_2 14 59 IPR001841 -
Rops3g00021 713 SMART ring_2 145 183 IPR001841 -
Rops3g00021 713 SMART ring_2 524 580 IPR001841 -
Rops3g00021 713 MobiDBLite consensus disorder prediction 608 628 - -
Rops3g00021 713 MobiDBLite consensus disorder prediction 94 132 - -
Rops3g00021 713 Coils Coil 598 618 - -
Rops3g00021 713 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 247 442 - -
Rops3g00021 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 625 IPR013083 -
Rops3g00021 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 618 IPR045134 -
Rops3g00021 713 ProSitePatterns Zinc finger RING-type signature. 539 548 IPR017907 -
Rops3g00021 713 CDD PHD_SF 13 59 - -
Rops3g00021 713 SMART PHD_3 13 60 IPR001965 -
Rops3g00021 713 FunFam Predicted protein 99 210 - -
Rops3g00021 713 SUPERFAMILY RING/U-box 517 606 - -
Rops3g00021 713 MobiDBLite consensus disorder prediction 608 713 - -
Rops3g00021 713 MobiDBLite consensus disorder prediction 664 699 - -
Rops3g00021 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 208 IPR013083 -
Rops3g00021 713 ProSitePatterns Zinc finger PHD-type signature. 14 59 IPR019786 -
Rops3g00021 713 ProSiteProfiles YDG domain profile. 276 424 IPR003105 -
Rops3g00021 713 MobiDBLite consensus disorder prediction 478 503 - -
Rops3g00021 713 Pfam RING-type zinc-finger 524 578 IPR027370 -
Rops3g00021 713 Pfam Zinc finger, C3HC4 type (RING finger) 145 183 IPR018957 GO:0046872
Rops3g00021 713 SMART G9a_1 271 428 IPR003105 -
Rops3g00021 713 SUPERFAMILY PUA domain-like 250 448 IPR015947 -
Rops3g00021 713 ProSiteProfiles Zinc finger RING-type profile. 524 580 IPR001841 -
Rops3g00021 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Rops3g00021 713 SUPERFAMILY RING/U-box 138 191 - -
Rops3g00021 713 CDD GATase1 258 343 - -
Rops3g00021 713 SUPERFAMILY FYVE/PHD zinc finger 5 64 IPR011011 -
Rops3g00021 713 Gene3D - 247 444 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00021 Rops-Chr3 388845 392917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00021 3 615 C2H2 Transcription Factor Family AT5G39550 55.032 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00021 K10638 - gmx:100801535 971.074