Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00016 ATGGCTTCCAGACAGGTTCTATTATTCAATCCCATCTTAGGAAATAACCCAGCAAGGGGAGCAAGGTTTTTGAGGACAGGAGGAACCCCAAACTCTCATAACAGTAGCACTTTGCAGGTTCAGGCGTCGCAGGACCCTCGCAGACCCCAGAAAGCACCCCCTGGAGTTGACACAAGAATCCATTGGGACAACGAAGATGAGGGTTGGATTGGAGGTAGAGGTACCAGCAGTAGCAGTAGCAGTGCAGAGGAGGAGAAATCCAATAACCTGTTGGGTGAGAACTTCGCTGATTTGCTCGACAGTTCTTCAGGTTCTCATTACGAATTCTTGGGAGTACCGGCAGATGCTGATTTAGAAGAAATTAAAGTGGCTTACCGAAGACTATCAAAGGAGTACCATCCAGACACAACTTCCCTCCCTCTTAAAACTGCCTCAGAAAAATTCATGAAATTAAGAGAGGTTTACAATGTTCTTTGCAATGAAGAAAGTCGGAGATTTTATGATTGGACCCTTGCTCAAGAGGCTGCAAGCCGCCAAGCAGAGAAAATGAAAATAAAATTACAAGATCCTTATGAGCAATATGTGAAGAACTATGAACCTGTTCCAGACACGGTTGACCGGCTTGGTGGAAAGAATATGAAGCTTAGTGATCAAGCAGTTTCTGCCATCACTATTGATTTTTTTATCATTATTTTTGCCATATGTTGCATCATTTATGTAGTTTTCTTTAAGGAACCATATTACTAA 747 0.427 MASRQVLLFNPILGNNPARGARFLRTGGTPNSHNSSTLQVQASQDPRRPQKAPPGVDTRIHWDNEDEGWIGGRGTSSSSSSAEEEKSNNLLGENFADLLDSSSGSHYEFLGVPADADLEEIKVAYRRLSKEYHPDTTSLPLKTASEKFMKLREVYNVLCNEESRRFYDWTLAQEAASRQAEKMKIKLQDPYEQYVKNYEPVPDTVDRLGGKNMKLSDQAVSAITIDFFIIIFAICCIIYVVFFKEPYY* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00016 248 CDD DnaJ 106 160 IPR001623 -
Rops3g00016 248 MobiDBLite consensus disorder prediction 71 88 - -
Rops3g00016 248 SUPERFAMILY Chaperone J-domain 102 171 IPR036869 -
Rops3g00016 248 SMART dnaj_3 104 163 IPR001623 -
Rops3g00016 248 FunFam DnaJ homolog subfamily C member 4 94 192 - -
Rops3g00016 248 Pfam DnaJ domain 106 168 IPR001623 -
Rops3g00016 248 ProSitePatterns Nt-dnaJ domain signature. 148 167 IPR018253 -
Rops3g00016 248 MobiDBLite consensus disorder prediction 18 88 - -
Rops3g00016 248 MobiDBLite consensus disorder prediction 27 46 - -
Rops3g00016 248 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 32 247 IPR044618 -
Rops3g00016 248 MobiDBLite consensus disorder prediction 52 68 - -
Rops3g00016 248 Gene3D DnaJ domain 96 193 IPR036869 -
Rops3g00016 248 PRINTS DnaJ domain signature 125 140 IPR001623 -
Rops3g00016 248 PRINTS DnaJ domain signature 107 125 IPR001623 -
Rops3g00016 248 PRINTS DnaJ domain signature 143 163 IPR001623 -
Rops3g00016 248 ProSiteProfiles dnaJ domain profile. 105 171 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00016 Rops-Chr3 330912 331937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00016 106 173 C2H2 Transcription Factor Family AT1G74250 34.722 1.10e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00016 K23051 - tcc:18610266 310.071