Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00010 ATGACATCCGACAATCCTTACGAGATCATGGACGATGATGAGGGATTTGATTGGGAAGCGGCTGCAAGAGAAGTCGACGTCGTTTGCCAGATGACCAGCGATGTAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGTTTCTCAGAAGAGAAAGCAATGCACTCTGGATAAGTTCGTGGCTGTTGCTGCCAAGAACGAAACCCCAACACCTCAGTTCCAAGAAGACCCTGAAGAGGGCCCTACCTGCATCCACCACATTGACGCCGAGGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTACCCAGTCCGCGCTCTTTTCAAACACATTGGTGGCCTTGCCAACTGGACTTGGCAAAACACTCATCGCTGCCGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTTGTCCTGCAGCAGATAGAAGCATGCCATAATATCGTGGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCAGCTAAGTCCTCCTAAAAGAGCTCGTTTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAAGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTTTGGTGATCGATGAAGCTCACAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCACCGGTGCAACTGAGAATATTAGCTTTAACTGCAACCCCAGGATCAAAGCAGAAGACGGTCCAGGATGTTATTGATAATCTGCATATCTCTAGGCTTGAATATCGCAGTGAAAATGACCATGATGTTATCTCATATGTTCACAATAGAAAAATAGACTTGATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTAGAAGTGATACGCCCTATAGTTGCCAGGCTTACAAATATTGGGGTCATCCAGAATAGGGATTATCGCACTTTGAGCCCTTGTGTATTACTTGAAATAAGGGAAAAGTTTCGTCAGGGGCATAGGCAAGATCTTTCTCATGTCAACCATGGAGATGTTGAAGGGTATTTTGGAGTTCTTATCACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAATAAGGCCAGCATATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATTTATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCACGGAGCATCAAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTGCTGGAGCATTTTAAAACTAATGATCCGCAAAACTCCAGGGTAATTATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGATGCACTTGGAGGAGCTGGGGATCTAGTCAGAGCTACCCAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGACAATCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGTGCTTACAATGTCATCGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACCGGAAGAAAGCATGATGGACGAGTTGTAGTTTTAGCTTGTGAAGGGGCGGAGTTGAAAGGATACTTGAGAAAACAGGCGAAGAGCAAGACTATAAGCAAACACATGCGAAATGGGGGCGTGAATAGCTTTGTCTTTCATCCTAGTCCAAGGATGATTCCCCACGTCCTTAAACCAGAAGTTCAATATGTTGAGCTGTCTATTGAAAAATTTGTTCCTCGTCAAAAGAATGTGAAAGACGACCATCTTCACATTTCTCCACCAAAGGACAAACTCACTCTTGCTGAAACTGATGTACTTGAAACATATTTTCACCCTACTGGGGAAAATAAATGTAGATTGTCTCTTATTGCGTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAGCATTCCTGTGGAACATTGATGCTTATAGACATGATGCAGCGTTTGCAAGGATTAGTAGCATTTCCTGGAGATCGCAAAACTTCTCTCCAGGAAGATCAGGGGTCAGGAGATAGTATGCCAGTTGCCATTCCTGAGCTTGATGAAGATAAAAAAGACAATGAATCATGCTCTAGGCATACAATGGTAAGGAATGTGGTCTCTGTAAATTGTCTGGAGCTGGATTCTTGTCATTTGGGGATTCAAACCAAAGACTTTGTTGATCTAACTCTTCAAGATGGTACTTTCTGTGACTTGGGTAAGCATAAAGAGGAAACATGTGAGGGTGATGAGACAATTCCTGAGACTCCAGTTGCTAAGAGAAATGTGTCAAATGAAGGAGCTAATACTGGTGAAATGAAAAATATTGTTGAGATCGAGACTTCTTTGTTGGCTGTAGATGCATGCATTAGTGGCATGAGAGATGAAGAACTTAGTCCTCGTTTAACTAATTTTATTCAAAGTGGCGTTGTTCCAGAGTCTCCCATTGATGAAAGAGGGCAATCAAAAAACAAGTTTGTCATTCGAGACTGTATTTCACCTGTTCATCTCCAGGAAGAACAGGATGTTAGTCCTTTAAGTTCTAGGGAAACCGAACAGGTCATCATTGATAGTGGCACTGGCAAGAATGTCTGTACTTCTCCTGTTAATGAAAATCAAACCCCTTTACTTGAGCTGAAGAATTGTGCAATTAGAAGAAGACGTGTCTTCCTTTCTCAAACTGAGGAATGCCATACACATATAGCTGACCCAAGCTTCAGTGAAGAATCACATTCAGTTTGTGGTGAAATGTCTGCAAGCATTGAACCTGCACGCAAATTTAAAAGATTGCGGAAAGTTGAAGATACTGAAAGTATTATGCATCGGAAAAACCATAATTTTTTAGCTTCAACTGCTAACATTTTCAAATCATCTTCTGCCTCCAATCCCACACGATATAAGCATGGCCAAGGTAAAAGGAAGTCAACACATAATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGCCCATGTATCTAATGATGAAGATGATGAGGATGGCAATTCATATGACAGTTTCATAGATGACAGGACCAACCCTACAGCGGCCAGTCAGCCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAACACCAATTAATGGAGGGCTCAATTTTTCTGCTACCTTCAGTCCTGTCCATGTGACTGTGACAGCCAGTGTTAGTGAAAGTGGGGATTCCTCAGGCAAGACAGCGAGTCATTTTCAGACAGGGCCAACCAATCAGTCAGTTAATCGAACTTCAGAATCAGTTCACATCGATTCAATATCCTCAGAAGCAATGCCTTCAACTAGTTCCCCTACAGGAACTAGGACAGAGGTAAGAAGTCGTAAAAGAAGATTGACATTTTATCATTCGGGACACTTTCCAAATATGAACCTTGAACAAGAATTTGCACTTGAATCGAAGAAAGAATCAGTGGATACAGATGCAACTATAGATGTCCTATGCGATGATCAATTTTATAATGATCTTGATCTTGACAAGTTGGAGGCACAAGCAACTTTGCATCTAAAACAGAAATTAGATTTGTCAATTCAGAAGCAAGATACGGTCCCTCAATCTCACTCACCGGAGCTTGATGTTTTTAGATCTCCATCATTTGACCTTGGTATATAA 3795 0.4132 MTSDNPYEIMDDDEGFDWEAAAREVDVVCQMTSDVKGKGKGKGKGKVSQKRKQCTLDKFVAVAAKNETPTPQFQEDPEEGPTCIHHIDAEAAKTWIYPVNVPLRDYQFHITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVLQQIEACHNIVGIPQEWTVDMTGQLSPPKRARFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYSYCEAVRELMAVPPVQLRILALTATPGSKQKTVQDVIDNLHISRLEYRSENDHDVISYVHNRKIDLIQVAMGQDAVEINNKFLEVIRPIVARLTNIGVIQNRDYRTLSPCVLLEIREKFRQGHRQDLSHVNHGDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKFMSKNEDILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMDALGGAGDLVRATQFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGAELKGYLRKQAKSKTISKHMRNGGVNSFVFHPSPRMIPHVLKPEVQYVELSIEKFVPRQKNVKDDHLHISPPKDKLTLAETDVLETYFHPTGENKCRLSLIAFPHFQTFPSRVHKVKHSCGTLMLIDMMQRLQGLVAFPGDRKTSLQEDQGSGDSMPVAIPELDEDKKDNESCSRHTMVRNVVSVNCLELDSCHLGIQTKDFVDLTLQDGTFCDLGKHKEETCEGDETIPETPVAKRNVSNEGANTGEMKNIVEIETSLLAVDACISGMRDEELSPRLTNFIQSGVVPESPIDERGQSKNKFVIRDCISPVHLQEEQDVSPLSSRETEQVIIDSGTGKNVCTSPVNENQTPLLELKNCAIRRRRVFLSQTEECHTHIADPSFSEESHSVCGEMSASIEPARKFKRLRKVEDTESIMHRKNHNFLASTANIFKSSSASNPTRYKHGQGKRKSTHNVRDFIEEEAEVSSDAHVSNDEDDEDGNSYDSFIDDRTNPTAASQPEASRMDMMAIYRRSLLSQTPINGGLNFSATFSPVHVTVTASVSESGDSSGKTASHFQTGPTNQSVNRTSESVHIDSISSEAMPSTSSPTGTRTEVRSRKRRLTFYHSGHFPNMNLEQEFALESKKESVDTDATIDVLCDDQFYNDLDLDKLEAQATLHLKQKLDLSIQKQDTVPQSHSPELDVFRSPSFDLGI* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00010 1264 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 4 1248 - -
Rops3g00010 1264 CDD FANCM_ID 311 425 IPR039686 GO:0006281|GO:0043138
Rops3g00010 1264 Gene3D hef helicase domain 308 430 - -
Rops3g00010 1264 MobiDBLite consensus disorder prediction 1006 1074 - -
Rops3g00010 1264 Gene3D - 431 591 IPR027417 -
Rops3g00010 1264 FunFam Fanconi anemia, complementation group M 98 294 - -
Rops3g00010 1264 MobiDBLite consensus disorder prediction 1114 1169 - -
Rops3g00010 1264 SMART helicmild6 471 561 IPR001650 -
Rops3g00010 1264 MobiDBLite consensus disorder prediction 715 744 - -
Rops3g00010 1264 SMART ultradead3 99 293 IPR014001 -
Rops3g00010 1264 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 608 IPR001650 -
Rops3g00010 1264 MobiDBLite consensus disorder prediction 1114 1163 - -
Rops3g00010 1264 Pfam Type III restriction enzyme, res subunit 116 261 IPR006935 GO:0003677|GO:0005524|GO:0016787
Rops3g00010 1264 MobiDBLite consensus disorder prediction 1241 1264 - -
Rops3g00010 1264 CDD DEXDc_FANCM 101 283 IPR044749 GO:0005524
Rops3g00010 1264 Gene3D - 99 294 IPR027417 -
Rops3g00010 1264 CDD SF2_C_FANCM_Hef 435 569 - -
Rops3g00010 1264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 279 IPR014001 -
Rops3g00010 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 572 IPR027417 -
Rops3g00010 1264 Pfam Helicase conserved C-terminal domain 444 560 IPR001650 -
Rops3g00010 1264 FunFam ATP-dependent RNA helicase, putative 410 595 - -
Rops3g00010 1264 MobiDBLite consensus disorder prediction 1023 1042 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00010 Rops-Chr3 249318 274333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00010 392 559 Eukaryotic Initiation Factors Gene Family AT3G13920 27.473 1.95e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00010 K10896 - gmx:100820078 1797.71