Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05401 ATGGAAGCCAGTGCTGGACTGGTCGCTGGTTCTCACCACCGCAATGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAGGTGTGTGAGATTTGTGGTGATGATGTGGGACTCACAGTGGATGGGGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGTATGCCGGCCATGCTATGAATATGAAAGGAGGGAAGGGAGACAACTTTGCCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGAAGATGAGGAGGACGTGGATGACATTGAACATGAATTTAATATTGAGGACCAAATGAACAAGCATGACCATTCTGCTGAGGCCATGCTGCATGGAAAGATGAGCTATGGGAGAGGTCTTGAAGATCATGAGAATGCTCAATTTCCAGCTGTTATTGCTGGCGGTCGCTCTCGGCCTGTGAGTGGGGAATTCCCAATAGCATCTCATGGTTATGGGGGAGCAGATGTTATCTTCTTCGCTGCACCCACGAGTGTACCCGTATCCGGCGTCTGA 567 0.5062 MEASAGLVAGSHHRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDQMNKHDHSAEAMLHGKMSYGRGLEDHENAQFPAVIAGGRSRPVSGEFPIASHGYGGADVIFFAAPTSVPVSGV* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05401 188 CDD mRING-HC-C4C4_CesA 35 85 - -
Rops2g05401 188 FunFam Cellulose synthase 19 110 - -
Rops2g05401 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Rops2g05401 188 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Rops2g05401 188 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Rops2g05401 188 SUPERFAMILY RING/U-box 21 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05401 Rops-Chr2 96068112 96069163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05401 1 164 Cell Wall Biosynthesis AT5G17420 81.707 1.89e-84 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05401 K10999 - gmx:100779834 317.005