Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05391 ATGATATTTCGCTTGAGCATCCCACTACAGGCTATGCCAAACCCTGATATTTATGTTCCAAAGCGAAAAGCAGAGACGCCTGCTGTTTATGACAGCGAGCAACCTCCATCTAATTTGGAGAAAAAACCCAAGAACGGGTGGAGTTGTGCACTATGTCAGATTAGTGCCACAAGTGAAAGAGGCTTGAATGAACATTTTCACGGTAAGAAGCACAAGGCCAAGGAAGCCGCATCGAGATTTCAGAAGATTGGGTTGGATACAAAAGAAGATAGGAAGTCTCTTCAACCTTGCATGACTGGGGGTGACATAAATCCGACAATGGTCAATGTGCAGAAAAGCCAACATATAGGTGGTTTGGAGAAACAAAATGAAACACCAACTGAGGAGGCAGGGAAGATAAATGCATCGAAAAGGAGGAATATTGACTACTGGTGTGAAATTTGTGAAATTGGCACTAATTCACTAGTTCTCATGGAAAGCCATATAAATGGGAAAAAACATCAGAAGCAAATGAAGAAATTTAGTCAGAACAATGGGAGTGCCCCTCCTACATCCTCTGTATCACAAGAAGCTCCCGGGTTGATCCAAGATGCAGATGTTGTTGTTAATAAAGAAATAGACCAAGAGATAACACCTGCCATGAATGGAGATGATGTTGTTGTTAATAACGAAACAGACCAAAAGATAACACCTGCCATGAATGCAGATGATGTTGTTGTTAATAAGGAAACAGACCAAAAGATAACACCAGCCATGAACGAAGAAACAGCACCAACGATGGCAGAGAGTTTTCCAGATTCAGATGAAGTTCATCCAGTGGCTGAATCAAAAGATGGAGCAGGTGAAGAACTGTAA 855 0.4164 MIFRLSIPLQAMPNPDIYVPKRKAETPAVYDSEQPPSNLEKKPKNGWSCALCQISATSERGLNEHFHGKKHKAKEAASRFQKIGLDTKEDRKSLQPCMTGGDINPTMVNVQKSQHIGGLEKQNETPTEEAGKINASKRRNIDYWCEICEIGTNSLVLMESHINGKKHQKQMKKFSQNNGSAPPTSSVSQEAPGLIQDADVVVNKEIDQEITPAMNGDDVVVNNETDQKITPAMNADDVVVNKETDQKITPAMNEETAPTMAESFPDSDEVHPVAESKDGAGEEL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05391 284 SMART ZnF_U1_5 140 174 IPR003604 GO:0003676|GO:0008270
Rops2g05391 284 SMART ZnF_U1_5 44 78 IPR003604 GO:0003676|GO:0008270
Rops2g05391 284 MobiDBLite consensus disorder prediction 268 284 - -
Rops2g05391 284 PANTHER OS06G0651300 PROTEIN-RELATED 13 216 - -
Rops2g05391 284 MobiDBLite consensus disorder prediction 167 191 - -
Rops2g05391 284 Gene3D Classic Zinc Finger 120 175 - -
Rops2g05391 284 MobiDBLite consensus disorder prediction 173 191 - -
Rops2g05391 284 SUPERFAMILY beta-beta-alpha zinc fingers 134 174 IPR036236 -
Rops2g05391 284 Gene3D Classic Zinc Finger 33 84 - -
Rops2g05391 284 MobiDBLite consensus disorder prediction 247 284 - -
Rops2g05391 284 SUPERFAMILY beta-beta-alpha zinc fingers 22 78 IPR036236 -
Rops2g05391 284 Pfam Zinc-finger of C2H2 type 143 167 - -
Rops2g05391 284 Pfam Zinc-finger of C2H2 type 47 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05391 Rops-Chr2 95988267 95989543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05391 16 174 C2H2 Transcription Factor Family AT2G19380 26.220 5.93e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05391 - - aprc:113874763 212.231