Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05385 ATGGGGAAAGTATCACAGAAAGACGATGCAAGAAACAACAATAAGCTTAACACAACTAACACTGTCACCACCAAGGTGAAACGAACAAGGAAAAGTGTCCCTAGAGACTATCCACCTCAACGCAGTTCAATATACAGAGGAGTCACTAGGCACCGGTGGACAGGTCGATATGAAGCTCATTTATGGGACAAAAATTGCTGGAATGAGTCGCAGAACAAGAAAGGACGACAAGGTGCTTATGACAATGAGGATGCGGCAGCACAAGCTTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGACATCATCACAACGGAAGGTGGGAGGCTCGGATTGGCAAACTACCCAGGAAGAAGCTGCTACAGCCTACGACATGGCAGCTATTGAATACCGTGGACTTAATGCTGTCACCAATTTTGATCTCAGCCGTTATATTAAGTGGCTTAAGCCCAACAACAACAATGATAATAACACGAGTAATATTAACCTTGTTGATGTTAACCCTAATTGTAACACCAACTTCAGCCCAAACTCTAATCAAGAATTGGAATTTTTCCACAATCAAAAATCATGCAACAAGACTAGAGACGAAGCCACGTTGGTTCAACCCCGTCCACCTGGTGCCACATCAGCCCTAGGGCTTCTACTTCAGTCATCTAAGTTTAAGGAAATGATGGAAATGACATCTGTGACCAATCTGTCAACAACTTTGGAGGAGTCTGAAATGTCACAATGCACATTTCCTGATGACATTCAAACGTACTTTGGGTATGAAGATTCCAATAGGTTTGAGGAACGGGATGATGCCATGTTGAACGAGCTCAACTCCATTATGCCTATGTTCCATTATGAAGATTTTGAGAGTTGA 888 0.4268 MGKVSQKDDARNNNKLNTTNTVTTKVKRTRKSVPRDYPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDNEDAAAQAYDLAALKYWGQDTILNFPTSSQRKVGGSDWQTTQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNDNNTSNINLVDVNPNCNTNFSPNSNQELEFFHNQKSCNKTRDEATLVQPRPPGATSALGLLLQSSKFKEMMEMTSVTNLSTTLEESEMSQCTFPDDIQTYFGYEDSNRFEERDDAMLNELNSIMPMFHYEDFES* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05385 295 FunFam AP2-like ethylene-responsive transcription factor 43 109 - -
Rops2g05385 295 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 121 186 - -
Rops2g05385 295 MobiDBLite consensus disorder prediction 1 42 - -
Rops2g05385 295 SUPERFAMILY DNA-binding domain 122 149 IPR016177 GO:0003677
Rops2g05385 295 MobiDBLite consensus disorder prediction 11 27 - -
Rops2g05385 295 PRINTS Ethylene responsive element binding protein signature 129 149 IPR001471 GO:0003700|GO:0006355
Rops2g05385 295 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Rops2g05385 295 ProSiteProfiles AP2/ERF domain profile. 44 107 IPR001471 GO:0003700|GO:0006355
Rops2g05385 295 SMART rav1_2 44 113 IPR001471 GO:0003700|GO:0006355
Rops2g05385 295 CDD AP2 43 149 IPR001471 GO:0003700|GO:0006355
Rops2g05385 295 Gene3D AP2/ERF domain 44 109 IPR036955 GO:0003700|GO:0006355
Rops2g05385 295 Gene3D AP2/ERF domain 113 149 IPR036955 GO:0003700|GO:0006355
Rops2g05385 295 Pfam AP2 domain 44 99 IPR001471 GO:0003700|GO:0006355
Rops2g05385 295 SUPERFAMILY DNA-binding domain 43 109 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05385 Rops-Chr2 95915119 95917811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05385 40 151 AP2-EREBP Transcription Factor Family AT5G57390 49.112 4.60e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g05385 AP2 1.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05385 K09285 - gmx:100795869 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05385 2 95915119 95917811 Rops2g05385 2 95915119 95917811 ECH