Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05354 ATGCCTCCTCCTCCTCCTGATCAACGCCATGACCGTGCCCATGGTGATGGCCAATCCCAACCCCAACCCCAACCTAAACCAAACCCTAACCTCCTTTCCTTCTTCCTCAAACCCATAATCATGCTCCTTCTCACCTCCATCTTCTTCCTCTTCCTCGGCCTCGCCGCCTTCCTCCTCCTCAACCTCTTCCTCCTTGGTGGCGCCCTCCACCGCCTTCGCTTTCGCCCCACCGCCACGCGCCCCGTTACTCCCTCCAACGGCTTCCGCCCTCGTGACGTCAACAAGCTCCCCCACTTTCGGGTCTCCAAGGGATCCGCACCCGGACCCGACTCCCAGTGCGTCGTTTGTTTGGACGGTTTCCGTAATGGCCAGTGGTGTAGAAAGCTCGCCGCCTGCGGTCACGTCTTTCACCGTAGATGTATTGACACGTGGCTCGTTAAGGCGGCTGCTTGCCCTACTTGTCGGACACCTGTTCGATTGAATGCTGGGGCATCGGATTCTGTTGTAGATGTCCCAACTCAATTTTGGACCTGCCCAACTAACTCCAATGCTTTCCCTATTTTATAG 567 0.5679 MPPPPPDQRHDRAHGDGQSQPQPQPKPNPNLLSFFLKPIIMLLLTSIFFLFLGLAAFLLLNLFLLGGALHRLRFRPTATRPVTPSNGFRPRDVNKLPHFRVSKGSAPGPDSQCVVCLDGFRNGQWCRKLAACGHVFHRRCIDTWLVKAAACPTCRTPVRLNAGASDSVVDVPTQFWTCPTNSNAFPIL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05354 188 SMART ring_2 113 154 IPR001841 -
Rops2g05354 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 162 IPR013083 -
Rops2g05354 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 165 - -
Rops2g05354 188 Pfam Ring finger domain 112 155 IPR001841 -
Rops2g05354 188 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Rops2g05354 188 MobiDBLite consensus disorder prediction 1 28 - -
Rops2g05354 188 SUPERFAMILY RING/U-box 109 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05354 Rops-Chr2 95422820 95423687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05354 26 160 C3H Transcription Factor Family AT2G18670 45.985 3.61e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05354 - - gmx:102664895 215.698