Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05352 ATGATAGTCACACACACACACACACACAACCATAAGATAAAAAAGGCACGAAGTGGTATCCCGAGGGTGATGACGGTGGCCGGAGATACACCGGAGTCGGAGATCGGTGACTGTGAGAATTATGGATCAGACGGCGTCGTTTCAAAAGAACGAAGGATCATCGTGGCGAACCAGTTACCAATAAGAGCTTTTCGTGAAGGGAAGAAATGGAGGTTCGAATGGGACAGGGACAGTTTGGTACTTCAGCTGAAAGATGGGTACCCTTCAGATATAGATGTGGTTTATGTTGGTTCGTTGAAAGCGGAGATCGAAACGTGGGAACAAGAAGAAGTGGCGCAGATTCTTCTAGAAAGGTTTTGTTGCGTGCCAACGTTTTTGCCTTCAGAGGTTCACAACAGATTCTACCATGGTTTCTGCAAGCATTATTTGTGGCCTCTGTTTCACTACATGCTTCCCATGTCGCCGAGTCAGGGTGCGTGTTTCGACCGTTCACAGTGGCAAGCTTATGTTCTTGCCAACAAGATCTTCGCCGACAAGGTCACCGAGGTTATCAACCCTGATGAGGATTATGTCTGGGTTCATGATTACCACCTCATGATCTTGCCCACTTTGTTGAGGAAGAGGTTCCACCGTGTGAAGCTTGGGTTCTTCTTGCACAACACGTTTCCGACGTCGGAAATCTACAGGACCATACCGGTTCGTGAGGAGATTCTCAAGGCGTTCTTGAACTGTGATTTGATTGGGTTTCACACCTTCGATTATGCGCGGCATTTTTTGTCTTGTTGTAGTAGGATGTTGGGTTTGGATTATGAGTCCAAGAGGGGTTACATTGGACTAGATTATTATGGTAGAACGGTGACTATTAAGATCCTCCCTGCTGGGATTCACATGGGTTTGCTTGAGTCGGTGTTGTCTTTGCCTAACACCGCTTCGAGGGTCAAAGAGTTGAGGGAGCAATATGAAGGGAAGGTTGTGATCGTGGGTGTGGATGACATGGACTTGTTCAAAGGTATAAGCTTGAAGTTCTTGGCATTGGGGCAGCTTCTTGATGAGCATCAAGATTTGAGGGGTAGAGTGGTGTTGGTTCAGATTCTGAACCCTGCTAGGAGCAAAGGGAAAGACATTCAGGATGTGAAGAGCGAGAGTGAGGCTATTGCAAATGAGATTAATGAGAAATATGGCAGAACTGGGTACCAGCCAATTGTTTTGGTCAATGGCCCTATTTCTACTCAGGAGAAGGCTGCATATTATGCCATCTCTGAGTGTTGTGTGGTGAATGCTGTGAGGGATGGGATGAATTTGATGCCTTATGAGTACACTGTTTGTAGGCAGGGAAGTGCTGCTTTGGATAAGGCACTTGGGGTTGAAGATGGGAGGAACAAACAGAGTGTTATCATTGTTTCTGAGTTCATTGGGTGCTCCCCTTCCCTCAGTGGAGCTATCAGGGTGAATCCTTGGAACATTGATGATGTTTCTGAGGCCATGAATTCGGCTATCACAATGCCAGAGGCAGAGAAGCATTTGCGTCATGAGAAGCATTATAAGTATATAAGCTCTCATGATGTAGCATATTGGGCTAGGAGTTTTGATCAGGATTTAGAGAGGGCTTGTAGGGAGCATTACCACAAGAGGTGTTGGGGTGTTGGCCTTGGCCTTGGATTCAGAGTTGTTGCTTTGGATCCTACTTTTAGGAAGTTATCCGTGGATAACATTGTCTCTGCCTATAGACATACACACAGTAGATTGATCCTTTTGGACTATGATGGCACCATGATGCCGAAGGCCTCCATAAACAAAACTCCAAGCACTGAAGTTATCAATGTCTTGAATCATTTATGCAGTGATCCCAGAAATATTGTATTCATTGTGAGTGGGAGAGATAAGGATCGCCTAAGCGAGTGGTTTTCTCCATGTGAGAAACTGGGTCTCTCTGCTGAGCATGGTTACTTCACTAGATGGAGTAAGGATTCTCCTTGGGAGACCCGTGGATTGACAACAGATTTTGATTGGAAAATGATTGTAGAACCTGTGATGGCGCTTTATACTGAAGCAACTGATGGTTCTTTCATTGAACATAAGGAAAGCGCAATTGTTTGGCACCATCAAGAGGCTGATCCTCATTTTGGATCATGCCAAGCGAAAGAGCTTCTTGATCACCTGGAGAATGTGCTGGCTAATGAGCCAGTGGTGGTCAAAAGGGGACAACATATAGTTGAAGTTAAGCCTCAGGGTGTGAGCAAAGGTAATGTGGTGGAAGACCTTATCACAACCATGCGAAATGAGGAGAAGTCACCAGATTTTCTGCTGTGCATAGGAGATGATCGCTCAGATGAAGATATGTTTGAAAGCATTGCTCGTTCTGTTTGTAATCCTGCTCTGCCAACCATATCACAAGTGTTTGCATGCACTGTTGGTCAGAAACCAAGTATGGCTAAATACTATTTGGATGATACTAGCGAAGTTATCAAGTTGCTTGAAGGACTTGCAAATGCATCAGCACCACCTACGTCCATAGCTTTTCAGGAATTGAGAGGAACACTGTAG 2544 0.4524 MIVTHTHTHNHKIKKARSGIPRVMTVAGDTPESEIGDCENYGSDGVVSKERRIIVANQLPIRAFREGKKWRFEWDRDSLVLQLKDGYPSDIDVVYVGSLKAEIETWEQEEVAQILLERFCCVPTFLPSEVHNRFYHGFCKHYLWPLFHYMLPMSPSQGACFDRSQWQAYVLANKIFADKVTEVINPDEDYVWVHDYHLMILPTLLRKRFHRVKLGFFLHNTFPTSEIYRTIPVREEILKAFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPAGIHMGLLESVLSLPNTASRVKELREQYEGKVVIVGVDDMDLFKGISLKFLALGQLLDEHQDLRGRVVLVQILNPARSKGKDIQDVKSESEAIANEINEKYGRTGYQPIVLVNGPISTQEKAAYYAISECCVVNAVRDGMNLMPYEYTVCRQGSAALDKALGVEDGRNKQSVIIVSEFIGCSPSLSGAIRVNPWNIDDVSEAMNSAITMPEAEKHLRHEKHYKYISSHDVAYWARSFDQDLERACREHYHKRCWGVGLGLGFRVVALDPTFRKLSVDNIVSAYRHTHSRLILLDYDGTMMPKASINKTPSTEVINVLNHLCSDPRNIVFIVSGRDKDRLSEWFSPCEKLGLSAEHGYFTRWSKDSPWETRGLTTDFDWKMIVEPVMALYTEATDGSFIEHKESAIVWHHQEADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGNVVEDLITTMRNEEKSPDFLLCIGDDRSDEDMFESIARSVCNPALPTISQVFACTVGQKPSMAKYYLDDTSEVIKLLEGLANASAPPTSIAFQELRGTL* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05352 847 FunFam Trehalose-6-phosphate synthase 2 664 743 - -
Rops2g05352 847 SUPERFAMILY HAD-like 581 829 IPR036412 -
Rops2g05352 847 Gene3D Glycogen Phosphorylase B; 40 303 - -
Rops2g05352 847 CDD GT20_TPS 51 534 IPR001830 GO:0003824|GO:0005992
Rops2g05352 847 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 51 538 - -
Rops2g05352 847 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 43 830 IPR001830 GO:0003824|GO:0005992
Rops2g05352 847 NCBIfam trehalose-phosphatase 580 829 IPR003337 GO:0003824|GO:0005992
Rops2g05352 847 Pfam Trehalose-phosphatase 584 819 IPR003337 GO:0003824|GO:0005992
Rops2g05352 847 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 44 301 - -
Rops2g05352 847 NCBIfam HAD-IIB family hydrolase 582 784 IPR006379 -
Rops2g05352 847 Gene3D Glycogen Phosphorylase B; 304 518 - -
Rops2g05352 847 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 580 697 - -
Rops2g05352 847 Pfam Glycosyltransferase family 20 51 534 IPR001830 GO:0003824|GO:0005992
Rops2g05352 847 CDD HAD_TPP 582 823 - -
Rops2g05352 847 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 710 841 - -
Rops2g05352 847 FunFam Alpha,alpha-trehalose-phosphate synthase 303 518 - -
Rops2g05352 847 Gene3D - 580 698 IPR023214 -
Rops2g05352 847 Gene3D - 710 837 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05352 Rops-Chr2 95380626 95385559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05352 47 832 Trehalose Biosynthesis Gene Families AT2G18700 70.000 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05352 K16055 - gmx:100810498 1460.66