Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05344 ATGCCTTGCTTCGCTTCAAGGAATGAAGACCGAGGCCGCCTCGATGCGGCTCAGATGGAAATGGGCGATATGCGGCATGTGAGGGAGGAAAATGTTTCGCTATCAACTGAGGAGCAAGAGGCAACTGTTTCATATGCAACTGAGGGTCCAGGTTCACCTTCACCACCTGTTGTTGTTGCTATATGGACTTCAAGACTCAAGCCAACATCATTTGGTGCAGTTAACAATTCGTGGAGAATATTCACATACAAGGAGTTGCATGCAGCTACCAATGGGTTCAGTGAAGATTATAAGCTTGGTGAAGGTGGGTTTGGAAGCGTCTATTGGGGAAGAACCAGTGATGGTCTTCAGATAGCGGTGAAGAAACTGAAAGCAATGAACTCAAAAGCAGAGATGGAATTTGCGGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAATTTACTGGGTCTTAGGGGATATTGTGTTGGAGATGATCAACGGCTTATAGTCTATGATTACATGCCAAATCTCAGCCTGCTTTCTCATCTTCATGGCCAGTTTGCTGTTGAAGTGCAACTGAACTGGCAAAGGAGAATGAATATTGCTATTGGCTCTGCTGAAGGCCTTCTGTACTTGCACCATGAGGTCACACCCCACATCATCCATAGAGACATCAAGGCAAGTAATGTGCTTCTGAATTCAGATTTTGAACCTCTAGTTGCTGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGGGTTAGCCACATGACTACCCGTGTTAAGGGTACTTTAGGATACTTGGCACCTGAATATGCCATGTGGGGAAAGGTCTCTGAAAGTTGTGATGTCTATAGCTTTGGAATTCTTCTGTTAGAGCTTGTAACTGGTAGAAAGCCCATAGAAAAGCTCCCTGGTGGGGTCAAGCGAACAATAACTGAGTGGGCTGAGCCTTTGATAACTAAAGGAAGGTTCAGGGATCTGGTTGATCCAAAACTTAGAGGAAACTTTGATGAAAATCAAGTCAAACAAGCAATCAATGTGGCTGCACTTTGTGTGCAAGGTGAGCCTGAGAAGCGACCTAACATGAAGCAAGTGGTTAGCCTTTTGAAAGGATATGAACCTGATGCAAAAGTGACAAAGATGAGGATGGATAGTATTAAATATAATGAAGAACTATTGGCACTTGATCAACTTAGTGATGGTGATTATGATGGAACTACTAGCTATGGTGTTTTTAGTGCTATTGAAGTCCAAAAGATGAATGATCCTTACAAGCGCGGTGATAACAAGAGAATGGGTTAG 1287 0.4343 MPCFASRNEDRGRLDAAQMEMGDMRHVREENVSLSTEEQEATVSYATEGPGSPSPPVVVAIWTSRLKPTSFGAVNNSWRIFTYKELHAATNGFSEDYKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQRRMNIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGVKRTITEWAEPLITKGRFRDLVDPKLRGNFDENQVKQAINVAALCVQGEPEKRPNMKQVVSLLKGYEPDAKVTKMRMDSIKYNEELLALDQLSDGDYDGTTSYGVFSAIEVQKMNDPYKRGDNKRMG* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05344 428 Pfam Protein tyrosine and serine/threonine kinase 97 364 IPR001245 GO:0004672|GO:0006468
Rops2g05344 428 Gene3D Transferase(Phosphotransferase) domain 1 169 387 - -
Rops2g05344 428 FunFam PTI1-like tyrosine-protein kinase At3g15890 66 168 - -
Rops2g05344 428 SMART serkin_6 93 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05344 428 CDD STKc_IRAK 99 366 - -
Rops2g05344 428 FunFam PTI1-like tyrosine-protein kinase At3g15890 169 381 - -
Rops2g05344 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Rops2g05344 428 ProSiteProfiles Protein kinase domain profile. 93 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05344 428 PANTHER OS01G0253100 PROTEIN 44 370 - -
Rops2g05344 428 Gene3D Phosphorylase Kinase; domain 1 68 168 - -
Rops2g05344 428 SUPERFAMILY Protein kinase-like (PK-like) 76 372 IPR011009 -
Rops2g05344 428 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05344 Rops-Chr2 95170077 95176448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05344 81 409 Trihelix Transcription Factor Family AT1G70460 45.000 3.16e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Rops2g05344 PK_Tyr_Ser-Thr 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05344 - - gmx:100783365 662.914