Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05341 ATGGGGATTCAGAGAGGAGGGTTAAAGGGACTTAGGAGCGGCTGGAGTGTGCCACCTAAGCCATGTGATTCTTGCAAGTTGACTTCGGCAGCGCTCTTTTGCCGTTCCGATTCCGCGTTTCTCTGCATCGCTTGTGATTCGAAAATTCACTGTGCCAATAAACTGGCGTCGCGTCACGAGCGCGTGTGGATGTGTGAGGTGTGTGAACAAGCACCAGCCTCTGTCACGTGCAAGGCCGATGCGGCGGCTTTATGTGTCACGTGCGACTCTGACATCCACTCCGCCAACCCCCTCGCTCGCCGCCACGAGCGTGTACCCGTGGAGCCGTTCTTCGATTCCGCCGTGAAATCTTCTTCCTCTTTCGGCGTCGTCGTCCCTACCGACGACGGTTTCAGCAACCACGACGACCCCGATGCGGTGGCGTGGCTCATTCCTAATCCGAATTTTGGGTCCAAACTCATCGACGCTCCGGATATGAAGTCCAGAGAGATGTTCTTCTCTGAAATGGATCCGTTTCTTGATTTCGATTACTCAAACTCGTTCCAGAGCAACAACAACCACAGCGCAGTAAACGACAGCGTCGTTCCAGTTCAAACCGCTCCAACACCCGTTACCGCTCCGGTTCCAACTTCGCTGATGAATCACCACTCAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCGTCGTTTAACCATCCATCACAGTCTCTTAGCCAAAGCGTATCATCGTCTTCGCTTGATGTTGGAGTGGTTCCAGAAGGAAACACAGTTTCTGACATATCATACCCTTTCGGTCTTAACGGTTCCGATTCGAGTGGGATGTCGGCACAAGGACAAGGAGCTACACAGTTATGCGGCATGGATCGTGAAGCGAGGGTTCTGAGATACAGAGAGAAGAGAAAGAACAGAAAGTTCGAGAAGACCATTCGTTACGCTTCGCGAAAGGCTTACGCTGAAACCCGGCCCAGAATCAAAGGCCGGTTTGCTAAACGAACCGAAATCGACTCGGAGGTGGACCGTCTTTATAGTCCTCCACCTACTGCTCTGACTGTCCCTGGTTCTCTCATCATGGACACTCCATACGGCGTCGTACCAACGTTTTAA 1113 0.5211 MGIQRGGLKGLRSGWSVPPKPCDSCKLTSAALFCRSDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAVKSSSSFGVVVPTDDGFSNHDDPDAVAWLIPNPNFGSKLIDAPDMKSREMFFSEMDPFLDFDYSNSFQSNNNHSAVNDSVVPVQTAPTPVTAPVPTSLMNHHSEGCFDIDFCRSKLSSFNHPSQSLSQSVSSSSLDVGVVPEGNTVSDISYPFGLNGSDSSGMSAQGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSEVDRLYSPPPTALTVPGSLIMDTPYGVVPTF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05341 370 CDD Bbox1_BBX-like 65 107 - -
Rops2g05341 370 SMART bboxneu5 65 107 IPR000315 GO:0008270
Rops2g05341 370 SMART bboxneu5 17 64 IPR000315 GO:0008270
Rops2g05341 370 CDD Bbox1_BBX-like 21 64 - -
Rops2g05341 370 ProSiteProfiles CCT domain profile. 292 334 IPR010402 GO:0005515
Rops2g05341 370 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Rops2g05341 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 347 IPR045281 GO:0009909
Rops2g05341 370 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Rops2g05341 370 Pfam CCT motif 292 334 IPR010402 GO:0005515
Rops2g05341 370 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05341 Rops-Chr2 95135757 95137406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05341 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 52.041 5.64e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops2g05341 zf-B_box 4.4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05341 2 95135757 95137406 Rops2g05341 2 95135757 95137406 ECH