Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05327 ATGGGTAGAGCTCCATGTTGTGATAAGGCCAACGTGAAGAGAGGACCTTGGTCTCCTGAAGAGGATGCTGCACTAAAAGCCTATATTGAAAAGAATGGAACTGGAGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATCGGAAGCAGGTGGTCCATTATTGCTGCTCAGCTACCTGGAAGGACAGACAATGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAATTGCTTGGGAGGCGCAAACAATCTAACTTTAACCAAAAAGACACAAATGGAATAGAGGAGAACTCTTATTCAAATTCCCTAAGCAGTTCAGCTCTTGAGAGACTCCAACTTCATATGCAACTTCAAAGCCCTTTCTCTTTCTACAATAATCCTGCACTGTGGCCCAAGTTGCATCCTTTCCAAGAAAAAATGATCCAAAGCTTGCAATCTTTGAATCATAGCTCTAACCCTGTGATGCAAAATGCTTTGCCTTCACCTCATGTTGGGCAAGGACAAAATGGTGATTTACTTCAACAAGATGTTGCAAAGATCAATAATCCACCACAGGTTGATCATTTGGAGAACAGTTCAGTTCCCTTCATTGCTTCTGGGAATAATAATAATAATCTAATGCACTCAAATCTTGCACCAAGAGGAGAAGCTATGGAGCAGACTCATGTGGGACTTGAGCCACTTGGTGCACTGCAATCTGAACTGGATGATATGCTCAACAACAGAAAAAATGTTTACATACCACAGGAAGATCATATGGCTGAATTTGATTGTTTCAGAGAGATCAATGGCTCAAAGGACAACTTGATTTGGTGGTCTAATGATTCTGATACCAAATCAGCATCCTCAAACTCATGGGAATCATCTACTAATCCAGTTCTTCTGCCAGAAGGGATGTTCCAAGATTATGAACTAGGTTACAGTCTCTAG 1050 0.4076 MGRAPCCDKANVKRGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNQKDTNGIEENSYSNSLSSSALERLQLHMQLQSPFSFYNNPALWPKLHPFQEKMIQSLQSLNHSSNPVMQNALPSPHVGQGQNGDLLQQDVAKINNPPQVDHLENSSVPFIASGNNNNNLMHSNLAPRGEAMEQTHVGLEPLGALQSELDDMLNNRKNVYIPQEDHMAEFDCFREINGSKDNLIWWSNDSDTKSASSNSWESSTNPVLLPEGMFQDYELGYSL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05327 349 SMART sant 13 64 IPR001005 -
Rops2g05327 349 SMART sant 67 115 IPR001005 -
Rops2g05327 349 CDD SANT 71 113 IPR001005 -
Rops2g05327 349 Gene3D - 7 68 - -
Rops2g05327 349 FunFam Transcription factor MYB36 70 139 - -
Rops2g05327 349 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops2g05327 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops2g05327 349 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops2g05327 349 CDD SANT 16 62 IPR001005 -
Rops2g05327 349 PANTHER OS09G0431300 PROTEIN 1 329 - -
Rops2g05327 349 Gene3D - 70 141 - -
Rops2g05327 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops2g05327 349 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Rops2g05327 349 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops2g05327 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops2g05327 349 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05327 Rops-Chr2 94957904 94959241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05327 1 195 MYB Transcription Factor Family AT5G57620 73.786 2.44e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g05327 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05327 K09422 - gmx:778083 548.895