Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05304 ATGTCACCTTCTCCACAAGAATTTATCTTCCGTTCTAAACTCCCAGACATTCCCATCCCCACACACCTTCCATTACACTCTTACTGTTTCCAGAACTTGTCTCAATTCCAACACCGCACATGTCTCATCGACGGCGATACCGGCGAGACGCTAACTTACGCCGACGTCCACCTAACCTCCCAGAGAATCGCCTCCGGTCTCCACTCAATCGGAATCCGTCAGGGTGACGTCATCATGCTCCTCCTCCGTAACTGTCCCCAGTTCGCCCTCGCCTTCCTCGGCGCCTCCTTCGCCGGAGCGGTCATCACCACCGCCAACCCGTTCTACACGCCGGCGGAGCTGGCTAAACAAGCCACGGCTACGAAGACCAAGCTTATCATAACACATGCCGCGTACGTCGAGAAAATCAAGGATTTCGCGGAAAACAATGATGTCAAAGTGATGTGCATTGATTCGTCAGCGGATGAAAAAGTTCTCCATTTCTCAGTGTTGACAAACGCTGATGAAAACGAAGCGCCTGACGTAAAGATAAGCCCAGACGACGTCGTTGCGCTCCCTTTTTCTTCTGGAACTTCTGGTCTCCCAAAGGGGGTTATGTTAACGCACAGAAACTTGGTCACCACGGTGGCGCAACTTGTTGACGGTGAAAACCCACATCAATATACTCACGAAGAGGATGTGCTTCTCTGTGTGCTTCCTATGTTTCATATCTATGCGCTTAACTCTATTTTGTTATGTGGGATTCGTGCTGGTGCGGCAGTGTTGATTGTGCAGAAGTTTGAGATTACTACGTTGTTGGAGCTGATTCAGAAGTACAAGGTAACGGTTGCGTCTGTTGTGCCACCTATCGTTTTGGCGTTGGTTAAGAGTGGGGAAACTCATCGATACGACATGTCGTCTATAAGGGTTATGATAACTGGTGCGGCACCTATGGGAACGGAACTTGAAGAAGCTGTTAAGGCTAGGCTACCAAATGCCACACTTGGACAGGGTTATGGGATGACAGAGGCAGGACCACTAGCCATTACCTTGTCATTTGCAAAGGAACCATCCGTGGCAAAATCAGGTGCCTGCGGAACCGTCGTAAGAAACGCTGAGATGAAAATCGTGGATACGGAGACAGGTGCTTCCCTTCAAAGAAACAAACCCGGTGAAATTTGCATCAGAGGCACAAAGGTTATGAAAGGATACTTAAAGGACCCTGAGGCCACGGAAAGAACTATAGACAAAGAAGGATGGTTACATACAGGTGATATTGGTTACATTGACAATGATGATGAACTCTTCATTGTTGATCGGTTAAAGGAGTTGATAAAATATAAAGGATTCCAAGTAGCTCCTGCTGAACTTGAAGCAATCTTGATTGCACACCCAAACATTTCTGATGCTGCCGTTGTACCGTTGAAAGATGAAACTGCCGGAGAAGTCCCTGTTGCGTTTGTCGTAAGATCAAATGGTTCTAAGATCACAGAGGATGAAATCAAGCAATACATTTCACAACAGGTGGTATTTTACAAGAGAATCAGTAGAGTTTTCTTCACGGACACTATTCCTAAAGCAGCCTCAGGCAAAATTCTGAGAAAGGAATTAACAGCAAGACTTAACGAAGGTCTAGTGGCCGTGTGA 1626 0.4705 MSPSPQEFIFRSKLPDIPIPTHLPLHSYCFQNLSQFQHRTCLIDGDTGETLTYADVHLTSQRIASGLHSIGIRQGDVIMLLLRNCPQFALAFLGASFAGAVITTANPFYTPAELAKQATATKTKLIITHAAYVEKIKDFAENNDVKVMCIDSSADEKVLHFSVLTNADENEAPDVKISPDDVVALPFSSGTSGLPKGVMLTHRNLVTTVAQLVDGENPHQYTHEEDVLLCVLPMFHIYALNSILLCGIRAGAAVLIVQKFEITTLLELIQKYKVTVASVVPPIVLALVKSGETHRYDMSSIRVMITGAAPMGTELEEAVKARLPNATLGQGYGMTEAGPLAITLSFAKEPSVAKSGACGTVVRNAEMKIVDTETGASLQRNKPGEICIRGTKVMKGYLKDPEATERTIDKEGWLHTGDIGYIDNDDELFIVDRLKELIKYKGFQVAPAELEAILIAHPNISDAAVVPLKDETAGEVPVAFVVRSNGSKITEDEIKQYISQQVVFYKRISRVFFTDTIPKAASGKILRKELTARLNEGLVAV* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05304 541 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 435 - -
Rops2g05304 541 Pfam AMP-binding enzyme C-terminal domain 449 524 IPR025110 -
Rops2g05304 541 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Rops2g05304 541 FunFam 4-coumarate--CoA ligase 2 436 537 - -
Rops2g05304 541 SUPERFAMILY Acetyl-CoA synthetase-like 9 536 - -
Rops2g05304 541 CDD 4CL 19 530 - -
Rops2g05304 541 Gene3D - 435 538 IPR045851 -
Rops2g05304 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 531 - -
Rops2g05304 541 Pfam AMP-binding enzyme 32 440 IPR000873 -
Rops2g05304 541 Gene3D - 4 434 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05304 Rops-Chr2 94624384 94629719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05304 7 502 Monolignol Biosynthesis Gene Families AT1G51680 67.063 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05304 K01904 - gmx:548034 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05304 2 94624384 94629719 Rops2g05304 2 94624384 94629719 ECH