Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05296 ATGGGTGGCGCATTCTTGGTTTGCACTACTGAGAACAACAAAGGGAACCTCGCACTCTTCTCCAATCGGAGCAGTTCTGAAGTAATTGCAATTTCTTTTGGAGCCTACTGTGTTGTGGTCTATATGTGGAACATTAACGAATCTACATATAAACGAGGGAAATTTGCAGTCATGGATACTGATGAGGAGTGTTCAATTGTTCTTGAGTTACCTGGAAATGATCCTTTCTTTGATAAAAAGAAGAAATTACTACAAAGTAAGGGGTTTAGTCCCAAGGAGCGGATATATCTGAGGAGCTCCTCAGAACCTGGTTGGATGAATGCTACTGTAAAGACATTACTTCAGATTGCACGAATCATACAGTTAAACGAGCTCGAACTTTACTTTGCTGAAGATGATGCATGCACATCAGTGGAGTTCTACAGCCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTCACCGACATATCAGTTTCTAGTTGTACACATCTTCACACAAATATCTTGCAAGGGTTACGGCAAACAATTCTTGGTTTAATTTCTGATTTTGGGGACAAAAATAGTATGAAGGGAGTAATTGATAAAGACCACAGTTGTTACCTAGAAGAATGCCTGATAGAGTGGGGTGAAAGCAATGGTGTAAGGACACAGTTAAAGATAGCTTATGTTGAAGGAGCAGGTCGGGGTGCGATAGCAAGGAATGATCTAAAAGTTGGAGACATTGCTTTTGAAATTCCTGTGTCCATTATCATTTCCGAGGAGCTTGTGCATGAAACTGATATGTATCATGTCTTAAAAGAGGTTGATGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAGAAGCACAACAGTGATTCAAAATTCAAAATTTACTTTGACACTCTCCCGGAAAAATTTAATACAGGATTGAGTTTTGGCATTGAAGCAATTACAATGTTAGATGGAACCTTGTTGCTTGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAATATGATGAGTTGTTTCCTGCTTTGTGCAATGATTTTCCTGATATATTTCCACGAGATCTGTACACATGGGAGAGATTTTTATGGGCTTGTGAACTTTGGTACTCCAATAGCATGAAGATAATGTTTTCTGATGGAGAGCTGAGAACATGCTTGATCCCTATTGCTGGCTTTCTTAATCATTCACTGTACCCACATGTTATGCACTATGGCAAAGTAGATCCTTCAACAAATTCATTGAAATTTTATCTTTCAAGACCATGTAGATCCGGAGAAGAATGCTGCTTAAGCTACGGGAACTTTTCCAGCTCTCATCTAATTACCTTTTATGGTTTCTTACCTCAAGGAGACAACCCGTATGATGTCATTCCGTTAGACATTGATGGTTCTGATGTTGATTATATTGAGAATGAACCCGTGTCCGACTGGACGACTCACATGGTGCGTGGTACTTGGCTCTCCAAGAATCACAGCATATTCTATTATGGCCTTCCCTCTCCATTATTGGATCATCTTCGGAGATCTCGGAGTCCCATGCTGCAAACTAAAACATTCTTGCAAGGAAACTTGGAAAATGAGCTGGAAGTTCTTCAAGATCTGATATATATCTTTGATGACATGATGGACAATATGGGTGAGATCGATCTTGATGACAGAGAAAACTGCAATTGGGATGAAAAATTGGCTCTGGATTATAAGAATCTACAAAGAAGAATTGCCCATTCTGTTTCAACTTCATGTCATACTGGTGTCAACATGGTGAAGAATGAACTATACAAGTGCATGGCTGAAGACATCAGAGGCTAA 1821 0.3965 MGGAFLVCTTENNKGNLALFSNRSSSEVIAISFGAYCVVVYMWNINESTYKRGKFAVMDTDEECSIVLELPGNDPFFDKKKKLLQSKGFSPKERIYLRSSSEPGWMNATVKTLLQIARIIQLNELELYFAEDDACTSVEFYSPRNELEALNSIVLLTDISVSSCTHLHTNILQGLRQTILGLISDFGDKNSMKGVIDKDHSCYLEECLIEWGESNGVRTQLKIAYVEGAGRGAIARNDLKVGDIAFEIPVSIIISEELVHETDMYHVLKEVDGISSETILLLWSMKEKHNSDSKFKIYFDTLPEKFNTGLSFGIEAITMLDGTLLLEEIMQARQHLHAQYDELFPALCNDFPDIFPRDLYTWERFLWACELWYSNSMKIMFSDGELRTCLIPIAGFLNHSLYPHVMHYGKVDPSTNSLKFYLSRPCRSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDIDGSDVDYIENEPVSDWTTHMVRGTWLSKNHSIFYYGLPSPLLDHLRRSRSPMLQTKTFLQGNLENELEVLQDLIYIFDDMMDNMGEIDLDDRENCNWDEKLALDYKNLQRRIAHSVSTSCHTGVNMVKNELYKCMAEDIRG* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05296 606 CDD SET_LSMT 221 451 - -
Rops2g05296 606 FunFam SET domain-containing protein 61 198 - -
Rops2g05296 606 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 206 546 - -
Rops2g05296 606 FunFam Transcription factor, E2F and DP-related 203 451 - -
Rops2g05296 606 Gene3D - 59 165 IPR036464 -
Rops2g05296 606 SUPERFAMILY SET domain 207 458 IPR046341 -
Rops2g05296 606 Pfam SET domain 230 437 IPR001214 GO:0005515
Rops2g05296 606 Pfam Rubisco LSMT substrate-binding 72 154 IPR015353 -
Rops2g05296 606 ProSiteProfiles SET domain profile. 219 437 IPR001214 GO:0005515
Rops2g05296 606 Gene3D set domain protein methyltransferase, domain 1 175 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05296 Rops-Chr2 94511974 94521792 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops2g05296 SET 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05296 K19199 - gmx:100778605 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05296 2 94511974 94521792 Rops2g05296 2 94511974 94521792 ECH