Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05284 ATGGACTCTTCCTCTTCTTCACCGCCAAACAACAACAACAACTCTCTTGCTTTCTCTCTTTCCAATCACTTCCCTAATCCTTCTTCCTCTTCACACTCTTCCTCCTCTCACCTCTCACTTTTCAACTCCTTCACCTATCCTACTCCAACACCATCTCTCACCCTCACAGGACCCAACAACACCGTGGATGCATCGCCAGAGACAGGATCAACCAACCTCTCTATATTCACCGGTGGACCAAAGTTCGAGGACTTTCTAGGCGGTTCTGTCACAACAACCGCCACCACCACCACCACCACTCAGCTTCCACCGTTCTCCACCGACAACGACATATACGATTCAGAACTGAAGACAACCATAGCCGCATGCTTCCCTCGCACCTTCACCGCCGAAACAACCATCGAACCTCAAAAGCCATCGCCAAAAAAAACCGTCGACACCTTCGGCCAACGCACCTCCATATACCGTGGCGTCACAAGACATAGATGGACTGGAAGATATGAAGCTCATCTATGGGATAACAGTTGCAGAAGAGAAGGACAAAGTAGGAAAGGAAGACAAGGTTCTAAGAGGATAGTGCAACAGTGCTTGTCCTTTTATTATTATTATTATGATGAAGTGAATGGTGTTGTTGAAGATTCTGACCGTGCTTTGTTTGGCTTTTGTACCTGGCGAATGATTGCTGACCCGTGGGATCCTTTTGCTCATTATGTTGTTTCAGTTTATTTGGGTGGTTACGATAAGGAAGAGAAGGCAGCTAGAGCCTATGATCTTGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTCCCAATTTCCAACTATGAGAAGGAGCTAGAGGAAATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACCGTGGAGTGACGAGGCACCACCAACATGGCCGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCAGCTATCAAATTCAGAGGACTAAATGCAGTCACAAACTTTGACATGAGTCGCTACGACGTGAAGAGCATTGCAAATAGCACTCTTCCCATTGGTGGTTTATCCAGCAAGAACAAAAATTCCACAGATTCTGTATCAGAGAGCAAAAGCCATGAGGCAAGTCGATCAGATGAACGAGATCCATCTTCAGCTTCATCTGGTACCTTTGCATCACAGCAACCTTCAAGTTCTACCCTAAGCTTTGCCATACCCATCAAACAAGACCCTTCAGATTACTGGTCCATCCTCGGTTACCATAATAATAATAATAATAATATTCATACTCCCCTTGACTGTGCCGTAAGAAACACTAGTGTTACCACAACTACTACTTTTCCATCTTCCAACAATGGCACTGGTACCACACCCTTTAACATGGACTTCTCTATTGCCCCCTCAAACACCAACAGTGATAACAATGTTGCGTTTTTCAGTGGAGGCATCTTTGTGCAGCAGCAGCAACAGCAACAACAACAAAATGGAAGCAGTGGTTCTTCTTCTTCTTCTTCAAGTTCAATCCCATTCGCCACGCCCATCTTTTCTTTAAATAGCAACACTAGTTATGAGAGCACTCCTGGTTATGGAAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCCAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGA 1764 0.4569 MDSSSSSPPNNNNNSLAFSLSNHFPNPSSSSHSSSSHLSLFNSFTYPTPTPSLTLTGPNNTVDASPETGSTNLSIFTGGPKFEDFLGGSVTTTATTTTTTQLPPFSTDNDIYDSELKTTIAACFPRTFTAETTIEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGSKRIVQQCLSFYYYYYDEVNGVVEDSDRALFGFCTWRMIADPWDPFAHYVVSVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNSTDSVSESKSHEASRSDERDPSSASSGTFASQQPSSSTLSFAIPIKQDPSDYWSILGYHNNNNNNIHTPLDCAVRNTSVTTTTTFPSSNNGTGTTPFNMDFSIAPSNTNSDNNVAFFSGGIFVQQQQQQQQQNGSSGSSSSSSSSIPFATPIFSLNSNTSYESTPGYGNWIGPTLHTFQSHAKPSLFQTPIFGME* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05284 587 FunFam AP2-like ethylene-responsive transcription factor 308 369 - -
Rops2g05284 587 CDD AP2 308 369 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 MobiDBLite consensus disorder prediction 382 427 - -
Rops2g05284 587 SUPERFAMILY DNA-binding domain 238 275 IPR016177 GO:0003677
Rops2g05284 587 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 494 - -
Rops2g05284 587 Gene3D AP2/ERF domain 154 275 IPR036955 GO:0003700|GO:0006355
Rops2g05284 587 SMART rav1_2 309 373 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 SMART rav1_2 154 279 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 ProSiteProfiles AP2/ERF domain profile. 154 273 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 CDD AP2 153 275 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 PRINTS Ethylene responsive element binding protein signature 255 275 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 MobiDBLite consensus disorder prediction 516 536 - -
Rops2g05284 587 Pfam AP2 domain 309 359 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 ProSiteProfiles AP2/ERF domain profile. 309 367 IPR001471 GO:0003700|GO:0006355
Rops2g05284 587 MobiDBLite consensus disorder prediction 396 411 - -
Rops2g05284 587 Gene3D AP2/ERF domain 309 369 IPR036955 GO:0003700|GO:0006355
Rops2g05284 587 MobiDBLite consensus disorder prediction 412 427 - -
Rops2g05284 587 SUPERFAMILY DNA-binding domain 308 369 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05284 Rops-Chr2 94352214 94355623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05284 110 587 AP2-EREBP Transcription Factor Family AT5G57390 49.407 6.46e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g05284 AP2 4.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05284 K09285 - gmx:100797828 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05284 2 94352214 94355623 Rops2g05284 2 94352214 94355623 ECH