Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05240 ATGCGGGATAGTGAGAAGAAGTTAAAGAAAGGAGTATCTAAGAAATCCATTCATTCCAAGGCACGCACAAAGTGCCAAGGGAAGAAGCGTAAACTAGAATCAAAATCTCACAAACACAGTGTTGGCTCAAATATATCAAAGAAGAAAGTTACTGATTCTTCCCTCAAGGGGTCACACAAGGATTCTTCAAAGAAGAAATTGATTATTGGACAGAATTCACATAAAACTCACAGAAAATCTTCACAGAAGCCATCTTCAAAGCTACAAGGCAAAAAAGTTTCTCATAGTTCTAGAAAAGAGGATAAAAATGCTGAAGGGGAGGTTAAGCTTCAAAAAATAAGGAGAAAGAGAAAGAAGAAAAGGAAAAGAAATAATGTAGATCTTGATGACGCTTCACGCTTGCAGAGGAGAACAAGGTACCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCACGAAAACAGATTTTAAAATGTAAATTGGGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGCTCCTTGAGTAGCATTGAAGATTCTTACATTGCTCCAGATGGATCTGTTTTCCATGAACATATATTCTGTGCAAAATGCAAACTTGGTGAAGATCTTCCAGATAATGATATTATACCCTGTGATGGTACATGTAATCGTGCTTTTCACCAAAAATGTATTGATCCTCCTTTAGACACTGAAAATGTTCCTTCAGGAGACCAGGGCTGGCTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAGGCAATGAATGCTCATCTTGGAACTCGCTTCTCCTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTCTACCTGATGGTGATACTGCATTGCTGAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATAATCCAGAGAGGAGAGAAGACAGCCATGATATCAACACTGAAGGAACTGATGATAATACATGTGATGATTTAAGCAGTTCCACCAGTCTGTGTTCTTCCAATGATGACTGTTCCCTGGCTTGTGGCCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTGCATATGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAGGCGAAGAGAAAAGGAGTCTGATGCTGTTGTTACTCTTATGACTTTGCATGAAAGTGAGAATAAACGTCACAAAAATGAGCATGACAACATGACAAGAGGGGATGCGTCAGGCATAAATATCAAAAGGCATTGTTTCAGGATTCCACCTGATGCGGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAACGAACTTCCTCCAAGATCTATAAAGGAGGGTCTTTCAATAGAGTTGGGACTTGCTATCGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTCAGCACTTAAAACCAGAAAGCAGCAAGCAGAAGGAACAGATCAACTTCAGAGTGTCACTTCTACGAAGAACTCTAGATTACTATCTCAGGAGAAAGCTGATCCTTTGAAATCAAAGACCATAAAAATTACTTTCACTCATTCCCCAAAGAATGTTAAAAATGTCACTGGTAGAAAGAAACTAAAGTCATCTAGCAGTCCTTTCAAGAAAAGACAACCTAAAGCATCTCCACCTCAGCCAAGCAACAAGGACTCTATTGAGGTCAGTGATGATGTGAGCTTGAAGAAACTGTTGAAAGCAAGAAAGAAGAGGGCAAAGTTTACATTTGAAGGAGACTCAGAGGCAGCAGAATTGGAATTTGAAAAAATAAGCAAATTGAAGACTAAAGTAGATAGTATGAAGCTCAAACTAACTGGAATTCAAAAGTTAAGAGTAAAGGGTTCAGATGAGCCATCTATTATGTATGTACCCACAGCTGTGTTGAGGGAAAAGGTTGAATTATAA 2019 0.3938 MRDSEKKLKKGVSKKSIHSKARTKCQGKKRKLESKSHKHSVGSNISKKKVTDSSLKGSHKDSSKKKLIIGQNSHKTHRKSSQKPSSKLQGKKVSHSSRKEDKNAEGEVKLQKIRRKRKKKRKRNNVDLDDASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLGIRDAIHQLDSLSSLSSIEDSYIAPDGSVFHEHIFCAKCKLGEDLPDNDIIPCDGTCNRAFHQKCIDPPLDTENVPSGDQGWLCKFCECKMEILEAMNAHLGTRFSLHSTWQDVFKEEAALPDGDTALLNPEEEWPSDDSEDDDYNPERREDSHDINTEGTDDNTCDDLSSSTSLCSSNDDCSLACGRRQRKAVDYKKLYDEMFGKDAPAYEQVSEDEDWGPGKRRRREKESDAVVTLMTLHESENKRHKNEHDNMTRGDASGINIKRHCFRIPPDAVEKLRQVFAENELPPRSIKEGLSIELGLAIEKVSKWFKNARYSALKTRKQQAEGTDQLQSVTSTKNSRLLSQEKADPLKSKTIKITFTHSPKNVKNVTGRKKLKSSSSPFKKRQPKASPPQPSNKDSIEVSDDVSLKKLLKARKKRAKFTFEGDSEAAELEFEKISKLKTKVDSMKLKLTGIQKLRVKGSDEPSIMYVPTAVLREKVEL* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05240 672 Pfam PHD-finger 221 276 IPR019787 -
Rops2g05240 672 Gene3D - 452 519 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 509 538 - -
Rops2g05240 672 ProSiteProfiles Zinc finger PHD-type profile. 219 276 IPR019787 -
Rops2g05240 672 MobiDBLite consensus disorder prediction 509 534 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 400 419 - -
Rops2g05240 672 FunFam pathogenesis-related homeodomain protein 452 516 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 558 572 - -
Rops2g05240 672 CDD homeodomain 453 514 IPR001356 GO:0003677
Rops2g05240 672 MobiDBLite consensus disorder prediction 318 332 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 11 44 - -
Rops2g05240 672 SUPERFAMILY Homeodomain-like 453 515 IPR009057 -
Rops2g05240 672 MobiDBLite consensus disorder prediction 52 68 - -
Rops2g05240 672 ProSiteProfiles 'Homeobox' domain profile. 450 510 IPR001356 GO:0003677
Rops2g05240 672 FunFam pathogenesis-related homeodomain protein-like 213 273 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 308 367 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 552 593 - -
Rops2g05240 672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 270 IPR013083 -
Rops2g05240 672 Pfam Homeodomain 460 505 IPR001356 GO:0003677
Rops2g05240 672 CDD PHD_PRHA_like 221 273 IPR045876 -
Rops2g05240 672 MobiDBLite consensus disorder prediction 1 130 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 93 111 - -
Rops2g05240 672 SMART PHD_3 221 274 IPR001965 -
Rops2g05240 672 ProSitePatterns Zinc finger PHD-type signature. 222 273 IPR019786 -
Rops2g05240 672 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 15 670 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 333 347 - -
Rops2g05240 672 SMART HOX_1 452 514 IPR001356 GO:0003677
Rops2g05240 672 SUPERFAMILY FYVE/PHD zinc finger 213 279 IPR011011 -
Rops2g05240 672 MobiDBLite consensus disorder prediction 70 85 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 573 592 - -
Rops2g05240 672 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05240 Rops-Chr2 93533165 93541029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05240 120 515 Homeobox Transcription Factor Family AT4G29940 55.478 2.51e-150 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Rops2g05240 Homeodomain 2.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05240 - - gmx:100817639 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05240 2 93533165 93541029 Rops2g05240 2 93533165 93541029 ECH