Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05238 ATGTCTTCATGTTTAAGTGGAACTGGGGGAAGAACAGCTTATGGGTTTGATTTGGAATTTATCAAATCTCCATGTTCATGGAGTGGAACTTCACATACATCTTCTCCTTCATCAACTATCTCTGAATCAAGCAATTCCCCATTAGCAATCTCCACAAGAAAACCAAGAACCCCTCGAAAACGACCCAACCAAACCTACAACGAAGCTGCGGTACTTCTTTCCACTGCATACCCGAACCTATTCTCCAACAAGAACCTCAAAAAAACAACAGCAAAATTCACGAAACCAGCTTCTGAAACATACGAATCTTCTTCAGAATTACTGTTACCTTTCAGTGGTGTGCTCCATGACCACAGTTCATCATCCTCTTTCCTTCTCCAACACAAGCCAAGTTTACAAACGGAGCCCAAAGCGGTGAACTTGCAAGAAAGGCCATGTCATAGTCCAGGGGAGATAAGTTCCAGAGTGAATTCCCTTGAATTGAACGATGATTGTGGAGATGATGATTTCGATGCGGAATCGATTCTTGATGAGGAAATTGAAGAAGGAATTGATAGCATCATGGGAAGCACGGTTCAGGAGGAGGAGGAAGATTCCAATGGTGTTTCTCCGTGGATCGGTTTTGGCGGGAAATTTGATTTCCGGCTCGGTTTTCCAAGGGCAGGGGTTAGGGCTCTCCGCCATGTGGATGACGGAAACTGGTGGAATTTTCCGGCGGTTGATATTCTTCAAATTTCACCCAAAATCAAGCCTCCTCCGCCGCCAGCGACGGAGAAGAAGAAAAAGAAGAAGGTGGTAGCGGTGGTGGAGAAACCGATGAATGAAACGGAATTGCCCAAATCGAACGCGGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAGTGCCTGGTCTGACCGGGGCTCGCCGTTCGCCGATGACAGCCCAGCCTCTGGTGTACCGGGAAATGACGTCACTGCACGGTTGTCACAAATTGATTTATTGTGGGACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTATAAAGAAAAACGGCGTACGCGCCTCTTCTCTAAGAAGATCAGATACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGGGCGATTTGTTAGGAGGCTGAGTTCTAGCTCAAATGCACACAGATGA 1164 0.4699 MSSCLSGTGGRTAYGFDLEFIKSPCSWSGTSHTSSPSSTISESSNSPLAISTRKPRTPRKRPNQTYNEAAVLLSTAYPNLFSNKNLKKTTAKFTKPASETYESSSELLLPFSGVLHDHSSSSSFLLQHKPSLQTEPKAVNLQERPCHSPGEISSRVNSLELNDDCGDDDFDAESILDEEIEEGIDSIMGSTVQEEEEDSNGVSPWIGFGGKFDFRLGFPRAGVRALRHVDDGNWWNFPAVDILQISPKIKPPPPPATEKKKKKKVVAVVEKPMNETELPKSNAGLMLKLNYDDVRSAWSDRGSPFADDSPASGVPGNDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLSSSSNAHR* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05238 387 MobiDBLite consensus disorder prediction 367 387 - -
Rops2g05238 387 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 27 381 - -
Rops2g05238 387 ProSiteProfiles CCT domain profile. 336 378 IPR010402 GO:0005515
Rops2g05238 387 MobiDBLite consensus disorder prediction 27 52 - -
Rops2g05238 387 MobiDBLite consensus disorder prediction 27 63 - -
Rops2g05238 387 Pfam CCT motif 336 377 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05238 Rops-Chr2 93520596 93523928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05238 285 378 C2C2-CO-like Transcription Factor Family AT1G25440 48.649 1.79e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops2g05238 CCT 7.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05238 - - aprc:113845796 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05238 2 93520596 93523928 Rops2g05238 2 93520596 93523928 ECH
Rops2g05238 2 93520596 93523928 Rops11g01733 11 27357403 27358395 PCT