Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05234 ATGGAGAATATTGATGAGGAATACAACCATTACTGGGAGACCAACAGGTTCTTCCAAACCCAAGAGTTCGATAGCTGGGCATTAGATGAGGCCTTCTCAGGGGACTATGATTCCAGCTCCCCAGACGGCGCCGTTTCATCTATGGGATCTAATAAGAACATTGTCTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCACTTAGAGCTGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATTGAGTACATCCAGCACTTGCATGAGCAAGAGAAGATAATCCAAGCTGAGATTATGGATCTTGAGTCTGTGAAACTGAAAAACCCAAGCTATGACTTTGAACAGGAGCTGCCTGTTTTGCTGAGGTCCAAGAAGAAGAGATCAGAACTATTTGATTCTGTCAGTTCAAGAAACTCCCCGATTGAAATAATGGAGGCAGAGGAAGAAGAGAAAGATCTTTTGCAAATAAAAATCCAATCTGCCATTTCAGCTCTTAATGATCCTCAAAGTCCAATGAGCATGTGA 555 0.4252 MENIDEEYNHYWETNRFFQTQEFDSWALDEAFSGDYDSSSPDGAVSSMGSNKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMDLESVKLKNPSYDFEQELPVLLRSKKKRSELFDSVSSRNSPIEIMEAEEEEKDLLQIKIQSAISALNDPQSPMSM* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05234 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Rops2g05234 184 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Rops2g05234 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 112 IPR036638 GO:0046983
Rops2g05234 184 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Rops2g05234 184 SMART finulus 54 103 IPR011598 GO:0046983
Rops2g05234 184 Coils Coil 154 174 - -
Rops2g05234 184 Gene3D - 49 113 IPR036638 GO:0046983
Rops2g05234 184 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 37 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05234 Rops-Chr2 93487356 93496039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05234 1 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29930 53.254 3.88e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g05234 HLH 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05234 - - gmx:100817978 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05234 2 93487356 93496039 Rops2g05234 2 93487356 93496039 ECH
Rops2g05234 2 93487356 93496039 Rops11g01737 11 27456987 27462333 PCT