Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05226 ATGAGTCAACGATCCAGCCGCGATCCACGTGGCCAGCAGGGCGTTTTACCGTATATTTTGGAAAACAAGGGCATTCCGAGTGAAAAAGTAGTTTGTTATTTTCTCGTTTCTGGAACTATGAATTTCTCAAAGGGTTCTTCTGCTAGCGGCCAGAAGACTGAGCGTGATTTAGAGGCTGGGTCTTCCACTAGCTGCTCTCCTGATATTGATGGCGGAGATTACTCCTCTGATCCATTTGATATCACCAGAACTAAGAATGCTTCCATTGAACGACTCAGACGCTGGAGGCAAGCTGTGCTTGTGCTTAACGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAGGAAACAAATATTGAGAATGATTATAGTGCATATGCGAGCCATTCAAGCAGCATATCGTTTCAAGGAAGCTGGAGAGAAAATGAATGGATTAGGAACTGTAGTACCTTCTCCCATCCCCACTGGAGAATTTCCAATTGGACAAGGGCAACTTACTTCAATCTCAAGAGAGCGTGATACTACTACTCTGCTGGAGTATGGAGGGGTTGTAGGGTTGTCAAATTTGTTGAAAACCAATTTAGAGAAGGGGATTCAAGGTGATGATGCTGACTTGTTAAAACGAAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAAAAAGGAAGAAGTTTTTGGATGTTTGTCTGGGATGCTTGCAAGGATCTAACCTTGATTATTTTAATGGTAGCTGCCATGGCTTCATTAGCACTAGGGATAAAATCTGAGGGCATAAAGGAAGGTTGGTATGATGGAGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCCGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAGCATAAAAGAAACATAAATTTGGAGGTTATTAGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCCGATGGAATTTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTCAATAAACATTCTAAGGAACCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGAAGGGGCACTATGCTGGTAACTGCTGTCGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTCTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATTATTGGTCTCTCTGTGGCTGTCATTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGACATACTAAAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAGGGTCGGTGATGCTATTGATGGAGCAATTAAGATAGTAACTGTGGCGGTCACCATTGTAGTGGTTGCAGTCCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACGATGGGGTCGGCCACAACCATTTGCAGTGATAAGACTGGAACACTGACTATGAATCAGATGACTGTGGTTGAGGTTTGCATTGGTGGGAAGAAGATTGTTCCTCCTCACGACAAGTCACAGCTCTCTCATATGCTCTGCTCTTTGCTGATTGAAGGCGTTGCACATAATACTAATGGAAGTGTTTATGTACCTCCTGAGAGTGGTAATGGTGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATTCAGCTTGGGATGGATTTTGAGGCTGTCAGATCAGAATCATCAATTATCCATGTCTTTCCATTCAATTCAGACAAAAAACGTGGTGGAGTTGCAATACAGACGGCTGACTCTAAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTCGCCTGTTGTACTGGGTATATTGATGCAAATGATCAGTTGGTGGAAATGGATGAAGAGAAGATGACAGTTTTTAAAAAAGTCATTGAAGATATGGCTGCTGATAGTCTACGATGTGTGGCCATTGCATATAGACTATATGAAATGGAGAATGTTCCAACCAGTGAAGAGGAACTTGCACACTGGTCATTACCAGAGGATGAACTCATTTTACTGGCTATTGTTGGTCTTAAGGATCCTTGTCGACCCGGCGTCAAAGATGCAGTGCAGCTTTGCCAAAGAGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAACACTGCAAAAGCAATTGCTCTGGAATGTGGAATACTTACTGATGCTACAGAGCCAAACATCATTGAAGGAAAAAGATTCCGTGCCTTGTCAGATGAAGAGAGAGAAGAAATTGTTGAAAATATATTGGTAATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAAGGGCATGTTGTGGCTGTGACTGGGGATGGGACAAATGATGCTCCGGCACTACATGAGGCCGATATAGGTCTTGCGATGGGTATTCAAGGTACAGAAGTGGCTAAAGAGAGCTCTGATATCATCATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATTTGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTATTATAAATGTTGTTGCTGCATTTTCCACTGGTGACGTTCCACTAAATACAGTACAGCTTCTTTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTTATGGATAAGCCTCCAATGGGTCGAAGGGAACCGCTTGTAACAAATGTCATGTGGAGGAATCTGCTGATACAGGCAATGTACCAAGTGTCTGTCTTGCTTATACTCAATTTCCGAGGCAGGAGCATACTGAGTCTGAGGCATGAGACAAACAACATTGCAATCAAAGTGAAGGACACTCTGATATTCAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCACGAAAGCCAGATGAATTCAACATATTCAAGGGGGTTACCAGAAACTACCTCTTTATGGGGATAATAGGATTGACTATTGTGCTTCAGATTGTCATCATTGAATATCTTGGGAAGTTCACTAAAACAGTCAAGCTTGATTGGAAGCAATGGCTCATCTGTGTCCTTATAGGATTTATCAGCTGGCCTCTTGCTGTGGTTGGGAAACTGATACCAGTACCAGAGACTCAGTTGGCTAACATCATTAGAAGATGTCTTCGTCGAAAAACTTAA 3348 0.4223 MSQRSSRDPRGQQGVLPYILENKGIPSEKVVCYFLVSGTMNFSKGSSASGQKTERDLEAGSSTSCSPDIDGGDYSSDPFDITRTKNASIERLRRWRQAVLVLNASRRFRYTLDLKKEEERKQILRMIIVHMRAIQAAYRFKEAGEKMNGLGTVVPSPIPTGEFPIGQGQLTSISRERDTTTLLEYGGVVGLSNLLKTNLEKGIQGDDADLLKRRNAFGSNNYPRKKGRSFWMFVWDACKDLTLIILMVAAMASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEHKRNINLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVNKHSKEPFLMSGCKVADGRGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGIIGLSVAVIVLIVLLARYFSGHTKNPDGSVQFIAGKTRVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVCIGGKKIVPPHDKSQLSHMLCSLLIEGVAHNTNGSVYVPPESGNGVEVSGSPTEKAILHWGIQLGMDFEAVRSESSIIHVFPFNSDKKRGGVAIQTADSKIHIHWKGAAEIVLACCTGYIDANDQLVEMDEEKMTVFKKVIEDMAADSLRCVAIAYRLYEMENVPTSEEELAHWSLPEDELILLAIVGLKDPCRPGVKDAVQLCQRAGVKVKMVTGDNVNTAKAIALECGILTDATEPNIIEGKRFRALSDEEREEIVENILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVFANIQKFIQFQLTVNIAALIINVVAAFSTGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDKPPMGRREPLVTNVMWRNLLIQAMYQVSVLLILNFRGRSILSLRHETNNIAIKVKDTLIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMGIIGLTIVLQIVIIEYLGKFTKTVKLDWKQWLICVLIGFISWPLAVVGKLIPVPETQLANIIRRCLRRKT* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05226 1115 Gene3D - 209 404 - -
Rops2g05226 1115 SFLD p-type atpase 510 886 IPR044492 -
Rops2g05226 1115 ProSitePatterns E1-E2 ATPases phosphorylation site. 530 536 IPR018303 -
Rops2g05226 1115 MobiDBLite consensus disorder prediction 44 77 - -
Rops2g05226 1115 SUPERFAMILY Calcium ATPase, transduction domain A 307 401 IPR008250 -
Rops2g05226 1115 CDD P-type_ATPase_Ca_PMCA-like 210 967 - -
Rops2g05226 1115 SUPERFAMILY Calcium ATPase, transmembrane domain M 186 1097 IPR023298 -
Rops2g05226 1115 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 535 734 IPR023299 GO:0000166
Rops2g05226 1115 FunFam Calcium-transporting ATPase 538 737 - -
Rops2g05226 1115 FunFam Calcium-transporting ATPase 284 404 - -
Rops2g05226 1115 Pfam E1-E2 ATPase 307 506 - -
Rops2g05226 1115 NCBIfam calcium-translocating P-type ATPase, PMCA-type 178 1098 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops2g05226 1115 MobiDBLite consensus disorder prediction 44 70 - -
Rops2g05226 1115 Gene3D - 525 879 IPR023214 -
Rops2g05226 1115 FunFam Calcium-transporting ATPase 851 1100 - -
Rops2g05226 1115 SMART Cation_ATPase_N_a_2 184 258 IPR004014 -
Rops2g05226 1115 Pfam haloacid dehalogenase-like hydrolase 525 848 - -
Rops2g05226 1115 FunFam Calcium-transporting ATPase 236 293 - -
Rops2g05226 1115 Gene3D - 87 143 - -
Rops2g05226 1115 Pfam Ca2+-ATPase N terminal autoinhibitory domain 76 119 IPR024750 GO:0005516
Rops2g05226 1115 Gene3D - 538 737 IPR023299 GO:0000166
Rops2g05226 1115 Pfam Cation transporting ATPase, C-terminus 919 1096 IPR006068 -
Rops2g05226 1115 SUPERFAMILY HAD-like 526 939 IPR036412 -
Rops2g05226 1115 FunFam Calcium-transporting ATPase 9 plasma membrane-type 382 552 - -
Rops2g05226 1115 PANTHER CATION TRANSPORTING ATPASE 142 1098 - -
Rops2g05226 1115 Pfam Cation transporter/ATPase, N-terminus 187 252 IPR004014 -
Rops2g05226 1115 PRINTS H+-transporting ATPase (proton pump) signature 834 850 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g05226 1115 PRINTS H+-transporting ATPase (proton pump) signature 866 891 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g05226 1115 PRINTS H+-transporting ATPase (proton pump) signature 682 700 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g05226 1115 SFLD Haloacid Dehalogenase 510 886 - -
Rops2g05226 1115 FunFam Calcium-transporting ATPase 730 879 - -
Rops2g05226 1115 PRINTS P-type cation-transporting ATPase superfamily signature 834 853 - -
Rops2g05226 1115 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Rops2g05226 1115 PRINTS P-type cation-transporting ATPase superfamily signature 752 762 - -
Rops2g05226 1115 PRINTS P-type cation-transporting ATPase superfamily signature 352 366 - -
Rops2g05226 1115 PRINTS P-type cation-transporting ATPase superfamily signature 730 741 - -
Rops2g05226 1115 PRINTS P-type cation-transporting ATPase superfamily signature 528 542 - -
Rops2g05226 1115 FunFam Calcium-transporting ATPase 87 143 - -
Rops2g05226 1115 Gene3D - 236 1087 - -
Rops2g05226 1115 NCBIfam HAD-IC family P-type ATPase 801 914 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g05226 1115 NCBIfam HAD-IC family P-type ATPase 273 443 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g05226 1115 NCBIfam HAD-IC family P-type ATPase 469 553 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05226 Rops-Chr2 93255463 93285740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05226 49 1108 Primary Pumps ATPases AT4G29900 71.805 0.0 1556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05226 K01537 - gmx:100790157 1766.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05226 2 93255463 93285740 Rops2g05226 2 93255463 93285740 ECH
Rops2g05226 2 93255463 93285740 Rops11g01744 11 27808073 27836097 PCT