Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05221 ATGCAAGGAGAAACCGCAACAACGACAACACCTCATCTAGACATCACGTGCCTTCCAAAATATCTCGTGGAAGGTGGAAACAACTTGCCCATTGAGACGTTTACTTTTCAAAACCAAAGGAGCTTCATTGTATATTCGACAACCAAATCAAAAGTGCATAGATGGGGAGCTGTTGGAGTCGTCTTCCATCAGTTTCTTCGAGCTCTCACCCCAACTCCAACACTGCCGGCAACTATCAACCAGAATAGCCACACCACTCGACTAAAAAATGAAGAGGAGTTTCCCTGTCGACAGATCCTGGATGCTGCAAACTTGAGAGTATTTACTTTGGCAGAACTGAAGGCAGCCACTAAAAATTTCAGAGCTGACAATGTGTTAGGAGAGGGAGGTTTTGGTATAGTATACAAGGGTTTGATTAAGGATAGAACAGCTGCAAATAGAGGTGAGGAATTGACTATTGCCATCAAGAGATTGAATTCTGACAGTCTCCAAGGAGTTAAGGAATGGCAGACAGAGGTGGATTTCTTAGGGAGGCTTTCTCATCCCAACCTTATAAAGTTGTTGGGCTTCGGGAGAGAGGATAGTGAGCTATTCCTGGTGTATGAACTTATGCAACGGGGCAGCTTGGATAACCAACTATTTGGAAGAGGTGCATATGTTCGGCCACCTTCATGGGACACAAGGCTAAAGGTTATGATTGGAGCAGCCAGGGCACTAGCTTTCCTACAAGAGAAGAAAATTATATACAGAGATGTTAAGACTTTAAATATATTACTTGACAAGACATATTCAGCCAAGTTATCAGACTTTGGCTTAGCCAAATATGGTCCTTCTGCTGATCAGACTCACCTAACAACAAGGGTCATGGGAACACACGGCTATGCAGCTCCTGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTGTATGGATTTGGGATTGTTTTGTTGGAGATGCTGACCGGTAAGAGGATAGGTGAGATAATGCGCCTTTGTCAGCAAAAGTCCTTACTGGATTGGCTAAAATCAAATCTATTGAATAGAGTGAAAATGAGAAGCACTATGGATGCAAGGTTGGAAGGCAGGTATCCACCCAACTTAGCTTTAAAAGTAGCTCAACTCACTCTCAAATGCATCCAACATGAACCCAAAATTAGGCCATCAATGAGAGAAGTTGTTGAAACACTGGAACAGATCGAAGCAGCAAATGAGAAACCAGCTGATAACAGAAACCGTGCAGCTCTTTCTCGGGCTCTTCAACCACATGGCCAACCAGATGGTGGTTAA 1293 0.4339 MQGETATTTTPHLDITCLPKYLVEGGNNLPIETFTFQNQRSFIVYSTTKSKVHRWGAVGVVFHQFLRALTPTPTLPATINQNSHTTRLKNEEEFPCRQILDAANLRVFTLAELKAATKNFRADNVLGEGGFGIVYKGLIKDRTAANRGEELTIAIKRLNSDSLQGVKEWQTEVDFLGRLSHPNLIKLLGFGREDSELFLVYELMQRGSLDNQLFGRGAYVRPPSWDTRLKVMIGAARALAFLQEKKIIYRDVKTLNILLDKTYSAKLSDFGLAKYGPSADQTHLTTRVMGTHGYAAPEYIATGHLYVKSDVYGFGIVLLEMLTGKRIGEIMRLCQQKSLLDWLKSNLLNRVKMRSTMDARLEGRYPPNLALKVAQLTLKCIQHEPKIRPSMREVVETLEQIEAANEKPADNRNRAALSRALQPHGQPDGG* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05221 430 ProSiteProfiles Protein kinase domain profile. 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05221 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Rops2g05221 430 SUPERFAMILY Protein kinase-like (PK-like) 99 398 IPR011009 -
Rops2g05221 430 ProSitePatterns Protein kinases ATP-binding region signature. 126 156 IPR017441 GO:0005524
Rops2g05221 430 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 204 412 - -
Rops2g05221 430 Gene3D Transferase(Phosphotransferase) domain 1 204 421 - -
Rops2g05221 430 FunFam Serine/threonine-protein kinase BIK1 85 203 - -
Rops2g05221 430 PANTHER OS01G0588500 PROTEIN-RELATED 82 402 - -
Rops2g05221 430 SMART serkin_6 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05221 430 Pfam Protein tyrosine and serine/threonine kinase 123 398 IPR001245 GO:0004672|GO:0006468
Rops2g05221 430 MobiDBLite consensus disorder prediction 403 430 - -
Rops2g05221 430 Gene3D Phosphorylase Kinase; domain 1 79 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05221 Rops-Chr2 93121856 93131245 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05221 103 402 Receptor kinase-like Gene Family AT4G02010 44.918 1.82e-84 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops2g05221 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05221 - - gmx:100813304 523.087