Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05212 ATGGAAGAGGATGAAGATTGCAGCACAGGGCTATCTCTTGGGCTTGGAATGGGAGGGCATGTACCAAAAAAGGAGAAGCAGAAAGAGAACAAGCCTTTGGCTTGTCTAGACTTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACAGAAATCATCATAACAAGGTAAATAGATTCAGTTTGGAGAGAATCCATGAAGGACACCTTTACCCCAACACAAACAGCACTGATTCTGATGACACCAACAACAAGAACCACTGCAGAAAGAAACTGAGGCTTACAAAGGAGCAATCAGCCACTCTTGAGAACAGCTTCAAACAACATAGCACTCTTAATCCAACCCAAAAACAAGCACTTGCTGACCAATTGAATTTAAAAACTAGACAAATTGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGATAGAGATGGATTACGAGTTGTTGAAAAAACACTGTCAAAATCTAAGTGATGAGAACAGAAAGTTGAAGAAGGAATTGCAGGAACTACGTGCAATAAAAGTTGGACCATCACCATTATGCATTCAACTTTCCAAAGCAACGACTCTGACGACTATGTGTTCTTCATGCGAGAAAATAATAAAGATCAATGAAGGGAAGAACAACAACGTTGTCATCTCAGATATGGTCCGAAACAAAAGTCACAAATTAGAGAACAACATGGAGTAA 705 0.4 MEEDEDCSTGLSLGLGMGGHVPKKEKQKENKPLACLDLAFELCPKGEAINRNHHNKVNRFSLERIHEGHLYPNTNSTDSDDTNNKNHCRKKLRLTKEQSATLENSFKQHSTLNPTQKQALADQLNLKTRQIEVWFQNRRARTKLKQIEMDYELLKKHCQNLSDENRKLKKELQELRAIKVGPSPLCIQLSKATTLTTMCSSCEKIIKINEGKNNNVVISDMVRNKSHKLENNME* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05212 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 213 - -
Rops2g05212 234 Pfam Homeobox associated leucine zipper 145 177 IPR003106 GO:0006355|GO:0043565
Rops2g05212 234 SMART halz 145 188 IPR003106 GO:0006355|GO:0043565
Rops2g05212 234 CDD homeodomain 89 146 IPR001356 GO:0003677
Rops2g05212 234 MobiDBLite consensus disorder prediction 1 29 - -
Rops2g05212 234 Pfam Homeodomain 89 143 IPR001356 GO:0003677
Rops2g05212 234 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Rops2g05212 234 FunFam Homeobox-leucine zipper protein 18 73 150 - -
Rops2g05212 234 Coils Coil 137 178 - -
Rops2g05212 234 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Rops2g05212 234 SUPERFAMILY Homeodomain-like 87 154 IPR009057 -
Rops2g05212 234 Gene3D - 87 144 - -
Rops2g05212 234 SMART HOX_1 87 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05212 Rops-Chr2 93016488 93017655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05212 76 204 Homeobox Transcription Factor Family AT3G60390 62.308 4.77e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g05212 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05212 - K09338 gmx:100812222 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05212 2 93016488 93017655 Rops11g01759 11 28197990 28199084 PCT