Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05210 ATGCCTCGAAGAATACTCCAAGAGACCTCCTCGTCACACCACAGCTCTGGAGCATTGTTCTTTATCCTTGGAGGGATTGCATTGCTCATTGTATTGCTGATTCTTGTGTTTGTATTTTGGAGGCGTTGTAAACGGCAAGCACAGGTGAAGGAGAATACGGCTCCAAAGAGTCAGCACCATGCAGCAGAGGTGATGAAGATGAAAGTCCTAACTACTCAACAGTCAGGATTCATGGAATTCATCAGTGGGAACCTTCGGACAATTAGCTACTTTGACTTCCAGACACTGAGGAGGGCCACCAGGAATTTCCATCCTAGGAACCTTCTTGGAAGTGGTGGATTTGGACCTGTCTATCAGGGAAAACTGGCAGATGGAAGGCTGATTGCTGTTAAGAAATTGTCTCTTGACAAATCTCAACAAGGAGAAAGAGAATTTCTAGCAGAAGTGAGAATGATCACGAGCATCCAACACAAAAATCTGGTTCGCCTTGTGGGATGTTGCACAGATGGGCCTCAACGGATACTTGTGTACGAATACATGAAGAACAAAAGTTTGGACCTCTTCATATATGGAAACAGTGATCAATTTCTGAATTGGAGCACTAGATTCCAAATTATTATTGGAGTAGCGCGGGGATTGCAATACCTCCATGAAGATTCACATATAAGAATTGTTCACAGAGATATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTATGCCGAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAGTTTGCTGGAACATTAGGTTATACCGCTCCTGAATATGCTATTAGAGGAGAACTGTCCGAAAAGGCAGACATCTATAGTTTTGGAGTTCTTGTACTTGAAATCATCAGTTGCAGGAAAAACACAGATCATACTTTACCATCAGAAATGCAGTACCTCCCTGAATATGCTTGGAAACTTTATGAGAAGGCAATGTTGATGGATCTTGTAGACCCCAAGCTGAAAGAACATGGATTTGTAGAAAAGGATGTTATGCAAGCATTCCATGTGGCCTTCTTATGCCTTCAGCCCCATGCAGATTTGAGACCTGCCATGTCAGAAATTGTATCATTGTTGACATTCAAAGTTGAAATGGTAACAACAGCAATTAGGCCAGCCTTCCTTGACCGAAGGCGCAAAATGGATGATGAGAAACACTCTTGGGAAGCCATATCCGATACTTTCTCAACTTCAGTGGTCAGTGATTCTGCTTCCCGACGTAAAGCACCAATATCTGAAGACCAATGA 1293 0.4285 MPRRILQETSSSHHSSGALFFILGGIALLIVLLILVFVFWRRCKRQAQVKENTAPKSQHHAAEVMKMKVLTTQQSGFMEFISGNLRTISYFDFQTLRRATRNFHPRNLLGSGGFGPVYQGKLADGRLIAVKKLSLDKSQQGEREFLAEVRMITSIQHKNLVRLVGCCTDGPQRILVYEYMKNKSLDLFIYGNSDQFLNWSTRFQIIIGVARGLQYLHEDSHIRIVHRDIKASNILLDEKFMPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDHTLPSEMQYLPEYAWKLYEKAMLMDLVDPKLKEHGFVEKDVMQAFHVAFLCLQPHADLRPAMSEIVSLLTFKVEMVTTAIRPAFLDRRRKMDDEKHSWEAISDTFSTSVVSDSASRRKAPISEDQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05210 430 Gene3D Transferase(Phosphotransferase) domain 1 180 386 - -
Rops2g05210 430 SUPERFAMILY Protein kinase-like (PK-like) 85 377 IPR011009 -
Rops2g05210 430 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 180 384 - -
Rops2g05210 430 Pfam Protein tyrosine and serine/threonine kinase 107 373 IPR001245 GO:0004672|GO:0006468
Rops2g05210 430 SMART serkin_6 103 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05210 430 FunFam Cysteine-rich receptor-like protein kinase 10 67 179 - -
Rops2g05210 430 ProSiteProfiles Protein kinase domain profile. 103 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05210 430 CDD STKc_IRAK 109 375 - -
Rops2g05210 430 Gene3D Phosphorylase Kinase; domain 1 75 179 - -
Rops2g05210 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Rops2g05210 430 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05210 Rops-Chr2 92986790 92989704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05210 91 416 Receptor kinase-like Gene Family AT1G56120 46.061 5.40e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops2g05210 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05210 - - ccaj:109792436 670.618