Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05203 ATGATACCAGCTTATCGCCATTCAGTGTCATCTCTTGTGCCTCTTGATCTTAATGAAGATCAAAACCATGAGCTTTTTAGTCCAAACCACCACGCCTCTTCTTCATTTTCTTCTTTATCATATCCTATTCTAATCAACCCCTCAGATCAAGATCAAGAAGGATCTTACTGCTGGGAACCAAAGTACTTACCAAATGGTGAAGAGGCCGAGCAGGTTATTCCTTCTAGCGGATCATGGGATCATTTGGCTACAGAAAAACACGAGAGCAGCAGTAGTAAGAGGAAGCTGACAGTTTGGCAGAAAGAAGATAGAGATGAAAATTTTGAAGCAGCAGAGGATGGTTCAGTGAAGTGGATGTCTTCAAAGATGAGAATGATGCGGAAGATGATGGTGTCAGATCAATCGAGTTCATATGCAGCTGACAACTCTATGCACAAGTTTGAAGATCAAAACCAACCATTTTCACCGCTTGGAACTGATAATAGCAGCAACAATTATTCAAACAACACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACGCCTCTCTGGAGGAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAACGCCTGTGGGATTCGACAAAGGAAGGCAAGACGTGCCATGGCTGCTGCGGCGGCATCTGCAAATGGTACAATTATAGAGACATCTGTGAAGCAAAACAAGATGCGGAAAAAAGAGAATAAGTCCAAAATCGAGTGTGCAACAAAGATGAAAAAGAAGCGCAAGCTTGAAGTTGAAACTAAGCCATCTCAAAATAGAAAGAAGTTGGGTTTTGAGGATTTGACATTAAGGTTGAGTAAGAACTTGGCTCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCGATCTTGCTTATGGCTTTATCTTATGGCCTGGTTCATGGATGA 918 0.4303 MIPAYRHSVSSLVPLDLNEDQNHELFSPNHHASSSFSSLSYPILINPSDQDQEGSYCWEPKYLPNGEEAEQVIPSSGSWDHLATEKHESSSSKRKLTVWQKEDRDENFEAAEDGSVKWMSSKMRMMRKMMVSDQSSSYAADNSMHKFEDQNQPFSPLGTDNSSNNYSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASANGTIIETSVKQNKMRKKENKSKIECATKMKKKRKLEVETKPSQNRKKLGFEDLTLRLSKNLALQQVFPQDEKEAAILLMALSYGLVHG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05203 305 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Rops2g05203 305 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 305 - -
Rops2g05203 305 CDD ZnF_GATA 173 201 IPR000679 GO:0006355|GO:0043565
Rops2g05203 305 Gene3D - 172 210 IPR013088 GO:0006355|GO:0008270
Rops2g05203 305 FunFam GATA transcription factor 21 168 256 - -
Rops2g05203 305 SMART GATA_3 168 219 IPR000679 GO:0006355|GO:0043565
Rops2g05203 305 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Rops2g05203 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 208 - -
Rops2g05203 305 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05203 Rops-Chr2 92910162 92911898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05203 92 305 C2C2-Gata Transcription Factor Family AT4G26150 42.041 2.68e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops2g05203 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05203 - - gmx:100810698 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05203 2 92910162 92911898 Rops2g05203 2 92910162 92911898 ECH
Rops2g05203 2 92910162 92911898 Rops11g01771 11 28379187 28380490 PCT