Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05199 ATGGCCCCTAGAATCCTTCTATGCGGCGACGTTTTAGGCCGCATGAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCGCTACTGTGCGTGGGTCAGTTCTTCCCTGACTCAGAAGAACAGGTGAATGAGTTGATAGCGTACATTGAAGGTGGGTCCCAGATTCCCCTCCCAACTTACTTCATCGGTGACTACGGTGTGGCCGCCCCTAAAATTTTGTTGGCAGCTTCCAAGGACTCTGCCAACCGTGGTTTCAAGATGGATGGCTTTACGGTTTGTGATAATTTGTATTGGTTGAAAGGCAGTGGCAAGTTCTCTTTACTGGGGCTATCTGTGGCCTATTTATCTGGTAGGAAATCATCGGATGTTAAACAGTTTGGAACTTACAGTCAGGATGATATTGATGCGTTGCGAGCAATAGCTGAGGAACCTGGAATTGTTGACTTGTTCTTGACTAACGAATGGCCAAGTGGGGTCACAAGTAGAGCAGCTGCTTCAGACATTCCTGCTGGACTCTCAGATTCTACAGGCAGTGATTCAACCATAGCAGAGTTAGCACAAGAAATTAAACCACGCTATCACATTGCAGGCACTAAAGGTGTATACTATGCCCGTGAACCATATTTGAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTAGCATCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCGTCTGTCATGTCTTCAACTGACATTGCCATGAAAACCACAAATACCACCTTATCACCATACACTTTTGTGGAGAAAAAAAATTCTCCAAAGGATTCTGCAAAGAGATCCAATGATGGTATCTCTGATTCTCAATACTGGAGATACGATGTTTCTCAAAAGCGACAGAAACGTGAAGCTGGAGATGGTGAGAAGATTTGTTTCAAATTTGTATCTTCTGGCTCTTGTCCACGAGAAGAGAAGTGCAATTTTCGACATGATATAGATGCAAGGGAGCAGTATATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAAGTTTAAGCACAGCTTGCAGGATGTTGGTGATAGCCATCCTTCCAGCAGGCCTGGATCTGAAAATACTAGGTCTAGCAGATCAAAAGAATGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAATCACATTTAATCATAAGCATTGGGGAAAATTACTATCTGGCACTGGCTAAAGGTCCACTTGTCGAAGACCATGTGCTGATAATACCAGTTGAGCACATGCCAAGTACCTTATCTCTGTCTTCTGAATCTGAAGTTGAGCTCCTAAGGTTTCAGAACAGTCTCAAGAGGCACTACAAGAGCCAAGAAAAGGAAGTCATATTTTTTGAGTGGGCTTCCATACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCTGTCATGGTTGAAAAAGTATTCAATTTAGCTGCACAAAAGTTGGGATTTAAATTTGTGGCAAAGAAATTTGATAGCATTTCTGATGGAAGAAAGTTTTTGAAGACACAAATTGATGGGAATTCAAGCTTATTTTATGCTGAAGTCCCATCAGGCACAATTCTGCTGCATCATGTTGAGGAGAAAGAGAGATTTCCTGCCCAATTTGGACGTGAGGTTCTGGCGGGCTTGCTTAATATGGCAGATAATGCAGATTGGAGGAATTGCAAACATAACAAAGATGAAGAAATGAAAATTGTTGAAGATTTCAAGAGCCGATTTCAAGAATATGATCCGAACTGTTGA 1821 0.4278 MAPRILLCGDVLGRMNQLFKRVSSVNKSAGPFDALLCVGQFFPDSEEQVNELIAYIEGGSQIPLPTYFIGDYGVAAPKILLAASKDSANRGFKMDGFTVCDNLYWLKGSGKFSLLGLSVAYLSGRKSSDVKQFGTYSQDDIDALRAIAEEPGIVDLFLTNEWPSGVTSRAAASDIPAGLSDSTGSDSTIAELAQEIKPRYHIAGTKGVYYAREPYLNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASVMSSTDIAMKTTNTTLSPYTFVEKKNSPKDSAKRSNDGISDSQYWRYDVSQKRQKREAGDGEKICFKFVSSGSCPREEKCNFRHDIDAREQYMRGVCFDFLNKGKCERGPDCKFKHSLQDVGDSHPSSRPGSENTRSSRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSLSSESEVELLRFQNSLKRHYKSQEKEVIFFEWASIRGTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFKFVAKKFDSISDGRKFLKTQIDGNSSLFYAEVPSGTILLHHVEEKERFPAQFGREVLAGLLNMADNADWRNCKHNKDEEMKIVEDFKSRFQEYDPNC* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05199 606 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Rops2g05199 606 Pfam Protein similar to CwfJ C-terminus 2 514 603 IPR006767 -
Rops2g05199 606 Pfam Protein similar to CwfJ C-terminus 1 385 500 IPR006768 -
Rops2g05199 606 FunFam Zinc finger CCCH domain-containing protein 59 369 495 - -
Rops2g05199 606 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Rops2g05199 606 Gene3D - 298 370 - -
Rops2g05199 606 MobiDBLite consensus disorder prediction 367 387 - -
Rops2g05199 606 SUPERFAMILY CCCH zinc finger 313 339 IPR036855 GO:0046872
Rops2g05199 606 Gene3D - 387 509 IPR036265 -
Rops2g05199 606 MobiDBLite consensus disorder prediction 373 387 - -
Rops2g05199 606 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 605 IPR040194 -
Rops2g05199 606 CDD MPP_CWF19_N 6 232 - -
Rops2g05199 606 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Rops2g05199 606 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Rops2g05199 606 SUPERFAMILY CCCH zinc finger 343 371 IPR036855 GO:0046872
Rops2g05199 606 SUPERFAMILY HIT-like 391 464 IPR036265 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g05199 CwfJ_C_1 2.6e-39 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05199 K24939 - gmx:100782106 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05199 2 92840293 92845587 Rops2g05199 2 92840293 92845587 ECH