LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g05190	ATGGATGGAGTCTTCTCCCTTCCTGAAGCTGCCAGAACTTATTTTCTCCGTTTTCTAGTCGAGTCTTTTGGCTGTGATTACATTTGTTTGTGGCGATATGATTCCATTTTAACCAATCGTTTGGTCTTCTTGGATGGTTTCTACTACAATGTTACAAACAACCAACCAAGCTCTTCTTTGGGGAGTAGTGTAGCTGAAAGGCTTTTCAATCAATATAAGTGTTTAACGTTTGATGTCAATGATGACTGTGTTCCTGGAATAGCTTTCAGGATCCACCTTCCCTACCTGGAGCTGCAACAACCGGATCTTCTAAGATTGACATCAACCGAAATACAAACACAATTCTTTCAAGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGGGAAATTGAACTTGGACTCTCCAATATGTCTCAAGCTGACATTCAGACAGCACTGGTGAATTTATTTCCAGAAGATTTCTCTATACAATGCCAATCAAATCAACCTTCATCATCTTCATCTTCTTTGATACCATTATCTACAGGTAGCCCTGAAACCCTTGGTGTGGCTCCCACAATTCAACCTGTGCCAACTACACAAACTAGCACATACCCACAAACCATCCAAGCATTAGCTCAAGTCCTTACAAGTCAATTCCCACCGGAGGATGAACATGATGCACTAGTAAGAGCACTCCTCCATGTTATATCTCCACCTTCTTCTTCAACTTCTCACCAGCACCAACCCCAGCAAAATTTGCCTTATAATTCATTGATACATCCAGAAGCTACTGCTTTTAAGAGATATAGACCAGATTTAGGTCCAAATATGACACCCCAAATGGGATCCAATTTTCGCAGGCAAAGCCTGCTGAATAGATCATTTGCATTCTTTAGAAGCTTAAATTTAATGAGAATGAGAGCTCGTCCCACAAGTACCCAGTTGCATCATATGATATCAGAGCGGAGAAGGCGTGAAAAAATCAATGAGAGTTTTCAGGCACTTAGAGCACTACTTCCTCCCGGAACTAAGAAAGACAAAGCTTCTATTCTTACAAGAGCAAAGGAGAAAATGAGTTCCTTGATAGTTGAAATTGAAAAGCTCAAATTGAGAAATCAAAAGTTGATGGCTCTTTTATCAGACAAAGAAGCTATTACTGAAGAAAAAAAAGCTAGCTCCTCAACTGAAAGATTGAGTGTTCGGGTTTCACATGTACAGGAAGCGAGTTCATCAGAAGAGCGAATGGTGGACTTGCAAGTGACCGTGAGAGTGAGAGAAGAAGATCCTCAAATTGATATATTGATTCAGTTATTGCAATTCTTAAGACGGGTTCAGAATGTGAGCTTAATTTCCATGGACACAAACACACATATTACACAAGGGACAACCGTTCATCAATTAACCTTCAGGCTAAGGATTATTGAGGGAAGTGAATGGGACGAGCCTGCCTTCCAGGAAGCAGTCAGAAGAGTGATCGCTGATCTGATACAATGGCAAGTGAACCAATAG	1503	0.4079	MDGVFSLPEAARTYFLRFLVESFGCDYICLWRYDSILTNRLVFLDGFYYNVTNNQPSSSLGSSVAERLFNQYKCLTFDVNDDCVPGIAFRIHLPYLELQQPDLLRLTSTEIQTQFFQEARIKTAVFMGCNKGEIELGLSNMSQADIQTALVNLFPEDFSIQCQSNQPSSSSSSLIPLSTGSPETLGVAPTIQPVPTTQTSTYPQTIQALAQVLTSQFPPEDEHDALVRALLHVISPPSSSTSHQHQPQQNLPYNSLIHPEATAFKRYRPDLGPNMTPQMGSNFRRQSLLNRSFAFFRSLNLMRMRARPTSTQLHHMISERRRREKINESFQALRALLPPGTKKDKASILTRAKEKMSSLIVEIEKLKLRNQKLMALLSDKEAITEEKKASSSTERLSVRVSHVQEASSSEERMVDLQVTVRVREEDPQIDILIQLLQFLRRVQNVSLISMDTNTHITQGTTVHQLTFRLRIIEGSEWDEPAFQEAVRRVIADLIQWQVNQ*	501

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops2g05190	500	Pfam	Helix-loop-helix DNA-binding domain	314	359	IPR011598	GO:0046983
Rops2g05190	500	Gene3D	-	309	386	IPR036638	GO:0046983
Rops2g05190	500	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	310	359	IPR011598	GO:0046983
Rops2g05190	500	SMART	finulus	316	365	IPR011598	GO:0046983
Rops2g05190	500	CDD	bHLH_AtbHLH_like	315	366	IPR045239	-
Rops2g05190	500	PANTHER	TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED	108	492	IPR044658	-
Rops2g05190	500	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	311	374	IPR036638	GO:0046983
Rops2g05190	500	Coils	Coil	349	383	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g05190	Rops-Chr2	92712221	92716452	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g05190	1	493	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G56960	37.184	2.57e-87	276

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Rops2g05190		HLH	2.3e-11	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g05190	-		-	gmx:100807098	560.066

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