Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05190 ATGGATGGAGTCTTCTCCCTTCCTGAAGCTGCCAGAACTTATTTTCTCCGTTTTCTAGTCGAGTCTTTTGGCTGTGATTACATTTGTTTGTGGCGATATGATTCCATTTTAACCAATCGTTTGGTCTTCTTGGATGGTTTCTACTACAATGTTACAAACAACCAACCAAGCTCTTCTTTGGGGAGTAGTGTAGCTGAAAGGCTTTTCAATCAATATAAGTGTTTAACGTTTGATGTCAATGATGACTGTGTTCCTGGAATAGCTTTCAGGATCCACCTTCCCTACCTGGAGCTGCAACAACCGGATCTTCTAAGATTGACATCAACCGAAATACAAACACAATTCTTTCAAGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGGGAAATTGAACTTGGACTCTCCAATATGTCTCAAGCTGACATTCAGACAGCACTGGTGAATTTATTTCCAGAAGATTTCTCTATACAATGCCAATCAAATCAACCTTCATCATCTTCATCTTCTTTGATACCATTATCTACAGGTAGCCCTGAAACCCTTGGTGTGGCTCCCACAATTCAACCTGTGCCAACTACACAAACTAGCACATACCCACAAACCATCCAAGCATTAGCTCAAGTCCTTACAAGTCAATTCCCACCGGAGGATGAACATGATGCACTAGTAAGAGCACTCCTCCATGTTATATCTCCACCTTCTTCTTCAACTTCTCACCAGCACCAACCCCAGCAAAATTTGCCTTATAATTCATTGATACATCCAGAAGCTACTGCTTTTAAGAGATATAGACCAGATTTAGGTCCAAATATGACACCCCAAATGGGATCCAATTTTCGCAGGCAAAGCCTGCTGAATAGATCATTTGCATTCTTTAGAAGCTTAAATTTAATGAGAATGAGAGCTCGTCCCACAAGTACCCAGTTGCATCATATGATATCAGAGCGGAGAAGGCGTGAAAAAATCAATGAGAGTTTTCAGGCACTTAGAGCACTACTTCCTCCCGGAACTAAGAAAGACAAAGCTTCTATTCTTACAAGAGCAAAGGAGAAAATGAGTTCCTTGATAGTTGAAATTGAAAAGCTCAAATTGAGAAATCAAAAGTTGATGGCTCTTTTATCAGACAAAGAAGCTATTACTGAAGAAAAAAAAGCTAGCTCCTCAACTGAAAGATTGAGTGTTCGGGTTTCACATGTACAGGAAGCGAGTTCATCAGAAGAGCGAATGGTGGACTTGCAAGTGACCGTGAGAGTGAGAGAAGAAGATCCTCAAATTGATATATTGATTCAGTTATTGCAATTCTTAAGACGGGTTCAGAATGTGAGCTTAATTTCCATGGACACAAACACACATATTACACAAGGGACAACCGTTCATCAATTAACCTTCAGGCTAAGGATTATTGAGGGAAGTGAATGGGACGAGCCTGCCTTCCAGGAAGCAGTCAGAAGAGTGATCGCTGATCTGATACAATGGCAAGTGAACCAATAG 1503 0.4079 MDGVFSLPEAARTYFLRFLVESFGCDYICLWRYDSILTNRLVFLDGFYYNVTNNQPSSSLGSSVAERLFNQYKCLTFDVNDDCVPGIAFRIHLPYLELQQPDLLRLTSTEIQTQFFQEARIKTAVFMGCNKGEIELGLSNMSQADIQTALVNLFPEDFSIQCQSNQPSSSSSSLIPLSTGSPETLGVAPTIQPVPTTQTSTYPQTIQALAQVLTSQFPPEDEHDALVRALLHVISPPSSSTSHQHQPQQNLPYNSLIHPEATAFKRYRPDLGPNMTPQMGSNFRRQSLLNRSFAFFRSLNLMRMRARPTSTQLHHMISERRRREKINESFQALRALLPPGTKKDKASILTRAKEKMSSLIVEIEKLKLRNQKLMALLSDKEAITEEKKASSSTERLSVRVSHVQEASSSEERMVDLQVTVRVREEDPQIDILIQLLQFLRRVQNVSLISMDTNTHITQGTTVHQLTFRLRIIEGSEWDEPAFQEAVRRVIADLIQWQVNQ* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05190 500 Pfam Helix-loop-helix DNA-binding domain 314 359 IPR011598 GO:0046983
Rops2g05190 500 Gene3D - 309 386 IPR036638 GO:0046983
Rops2g05190 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Rops2g05190 500 SMART finulus 316 365 IPR011598 GO:0046983
Rops2g05190 500 CDD bHLH_AtbHLH_like 315 366 IPR045239 -
Rops2g05190 500 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 492 IPR044658 -
Rops2g05190 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 374 IPR036638 GO:0046983
Rops2g05190 500 Coils Coil 349 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05190 Rops-Chr2 92712221 92716452 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05190 1 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.184 2.57e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g05190 HLH 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05190 - - gmx:100807098 560.066