Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05188 ATGGATGGAGTCTTCTCCCTTCCTGAAGCTGCCAGAACTTATTTTCTCCGTTTTCTAGTCGAGTCTTTTGGCTGTGATTACATTTGTTTGTGGCGATATGATTCCGTTTTAACCAATCGTTTGGTCTTCTTGGATGGTTTCTACTACAATGTTACAAACAACCAACCAAGCTCTTCTTTGGGGAGTAGTGTAGCTGAAAGGCTTTTCAATCAATATAAGTGTTTAACGTTTGATGTCAATGATGACTGTGTTCCTGGAATAGCTTTCAGGATCCACCTTCCCTACCTGGAGATGCAACAACCGGATCTTCTAAGATTGACATCAACCGAAATACAAACACAATTCTTTCAAGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGGGAAATTGAACTTGGATTCTCCAATATGTCTCAAGCTGACATTCAGACAGCACTGGTGAATTTATTTCCAGAAGATTTCTCTGTACAGTGCCAATCAAATCAACCTTCATCATCTTCATCTTCTTTGATACCATTATCTACAGATAGCCCTGAAACCCTTGGTGTGGCTCCCACAATTCAACCTGTGCCAACTACACAAACTAGCACATACCCACAAACCATCCAAGCATTAGCTCAAGTCCTTACAAGTCAATTCCCACCGGAGGATGAACATGATGCACTAGTAAGAGCACTCCTCCATGTTATATCTCCACCTTCTTCTTCAACTTCTCACCAGCACCAACCCCAGCAAAATTTGCCTTATAATTCATTGATACATCCAGAAGCTACTGCTTTTAAGAGATATAGACCAGATTTAGGTCCAAATATGACACCCCAAATGGGATCCAATTTTCGCAGGCAAAGCCTGCTGAATAGATCATTTACATTCTTTAGAAGCTTAAATTTAATGAGAATGAGAGCTCGTCCCACAAGTACCCAGTTGCATCATATAATATCAGAGCGGAGAAGGCGTGAAAAAATCAATGAGAGTTTTCAGGCACTTAGAGCACTACTTCCTCCCGGAACTAAGAAAGACAAAGCTTCTATTCTTGCAAGAGCAAAGGAGAAAATGAGTTCCTTGATAGTTGAAATTGAAAAGCTCAAATTGAGAAATCAAAAGTTGATGGCACTTTTGTCAGACAAAGAAGCTATTGCTGAAGAAAAAAAAGCTAGCTCCTCAAATGAAAGATTGAATGTTCGGGTTTCACATGTACAGGAAGCGAGTTCATCAGGAGAGCGAATGGTCGACTTGCAAGTGACTGTGAGAGTGAGAGAAGAAGGTCCTCAAATTGATATATTGATTCGGTTATTGGAATTCTTAAGACGGGTTCAGAATGTGAGCTTAATTTCCATGGACACAAACACACATATTACACAAGGGACAGCCGTTCATCAATTAACCTTCAGGCTAAGGATTATTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTCAGAAGAGTGATCGCTGATCTGATCTTTAATTTATAA 1494 0.4056 MDGVFSLPEAARTYFLRFLVESFGCDYICLWRYDSVLTNRLVFLDGFYYNVTNNQPSSSLGSSVAERLFNQYKCLTFDVNDDCVPGIAFRIHLPYLEMQQPDLLRLTSTEIQTQFFQEARIKTAVFMGCNKGEIELGFSNMSQADIQTALVNLFPEDFSVQCQSNQPSSSSSSLIPLSTDSPETLGVAPTIQPVPTTQTSTYPQTIQALAQVLTSQFPPEDEHDALVRALLHVISPPSSSTSHQHQPQQNLPYNSLIHPEATAFKRYRPDLGPNMTPQMGSNFRRQSLLNRSFTFFRSLNLMRMRARPTSTQLHHIISERRRREKINESFQALRALLPPGTKKDKASILARAKEKMSSLIVEIEKLKLRNQKLMALLSDKEAIAEEKKASSSNERLNVRVSHVQEASSSGERMVDLQVTVRVREEGPQIDILIRLLEFLRRVQNVSLISMDTNTHITQGTAVHQLTFRLRIIEGSEWDESAFQEAVRRVIADLIFNL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05188 497 SMART finulus 316 365 IPR011598 GO:0046983
Rops2g05188 497 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 492 IPR044658 -
Rops2g05188 497 CDD bHLH_AtbHLH_like 315 366 IPR045239 -
Rops2g05188 497 Gene3D - 309 386 IPR036638 GO:0046983
Rops2g05188 497 Coils Coil 349 383 - -
Rops2g05188 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Rops2g05188 497 Pfam Helix-loop-helix DNA-binding domain 314 359 IPR011598 GO:0046983
Rops2g05188 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 374 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05188 Rops-Chr2 92654067 92658248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05188 1 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.726 2.92e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g05188 HLH 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05188 - - gmx:100807098 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05188 2 92654067 92658248 Rops2g05188 2 92654067 92658248 ECH
Rops2g05188 2 92654067 92658248 Rops11g01783 11 28660404 28665212 PCT