Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05185 ATGGGAGAAAAAGTAGCCAGGGTCAAAGCAGAGTTATTAGATGACACCACTGGTTCCAATTCTGCTACCTCCGACGTCGATTTCAGCGAAACGAAGGACTCAGGAGTGACGGAAGAAAAGGGTTGCGTGGAATTAGCGGTTCATATCAAGGAAGAAGTTGCAGACGCCGCCGTTAACACGCCGTCAATGGAGTTACCTAAACCAATGGAAGGTTTGCTCGAGGTGGGTCCCCCACCCTTCCTCAAGAAAACCTTTGAAATGGTGGAGGATCCGGAAACCGACCCGATTGTTTCATGGAGCAAAACTCGTGACAGTTTCATCGTTTGGGACTCTCACGAATTCTCCAAAATCCTTCTCCCTAAGTACTTCAAACACAGCAATTTCTCCAGCTTCATTCGCCAACTCAACACTTACGGATTTAGGAAGGTTGATTCAGATCGTTGGGAGTTTGCAACTGAAGGATTCCAAGGAGGGAAGAAGCATTTACTGAAGAATATAAGGAGGAGAAGTAAATATAACAAACTACATCATCATCATGGGGGATTCAATTTGATGAAGCCTGATTTGGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAATATATTGAAAGTGGAAATTCTGAAGCTGAGGCAGCAACAAGAGAGTTCACATATTCAACTTGCTAATGTTCAGGAGAGAATTAGATGTGCTGAGTTGAAGCAGTATCAGATGATATTTTTTCTCACCAGAATGGCTAGAAGGCCAAGCTTTGTTGAGCAGTTAATCCAACAGGTTAAGAGAAAAAGAGAGCTTGATGGTAATGACATGGTTAAGAGACCTAGATTGCTTGCACCACAATGCCCTGTATCGTTTCCTAAGAAGGGTATGGAGACAATTCCAAATGTTGATTTTAGAAACCAAGGTCGTGAACAACTTGCTACATTGCAATCTGAGCTGAATGGACTCTTGTCTGAAACTGTGAACACCAATAGGATGGAGCCTCCAGCTGCTTCTTCTTCTATGGAAGATGAATTATGCAGTTCCATCCATGGATTTAAGGGATATGATTCTAGAGCAAATGGGCAAGATGGATCTTCTGCTTATCATGTTATGTCAGAGAAATTGCTGGAGGAAAATCCTGTTGTTGATGAAGGAGTAGATGTGAATGACTCGAATATCTATCTTGAATTAGAGGATTTGATAACTAAGCCGGTAGATTGGGTTGGATCTGCAAATGGATTGGTGGGGCAAACTAGCTGA 1242 0.4283 MGEKVARVKAELLDDTTGSNSATSDVDFSETKDSGVTEEKGCVELAVHIKEEVADAAVNTPSMELPKPMEGLLEVGPPPFLKKTFEMVEDPETDPIVSWSKTRDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFATEGFQGGKKHLLKNIRRRSKYNKLHHHHGGFNLMKPDLEAEVEKLKKDQNILKVEILKLRQQQESSHIQLANVQERIRCAELKQYQMIFFLTRMARRPSFVEQLIQQVKRKRELDGNDMVKRPRLLAPQCPVSFPKKGMETIPNVDFRNQGREQLATLQSELNGLLSETVNTNRMEPPAASSSMEDELCSSIHGFKGYDSRANGQDGSSAYHVMSEKLLEENPVVDEGVDVNDSNIYLELEDLITKPVDWVGSANGLVGQTS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05185 413 Gene3D - 74 170 IPR036388 -
Rops2g05185 413 MobiDBLite consensus disorder prediction 1 33 - -
Rops2g05185 413 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 66 299 IPR027725 -
Rops2g05185 413 PRINTS Heat shock factor (HSF) domain signature 80 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g05185 413 PRINTS Heat shock factor (HSF) domain signature 131 143 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g05185 413 PRINTS Heat shock factor (HSF) domain signature 118 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g05185 413 Coils Coil 186 213 - -
Rops2g05185 413 SUPERFAMILY "Winged helix" DNA-binding domain 76 169 IPR036390 -
Rops2g05185 413 Coils Coil 299 319 - -
Rops2g05185 413 FunFam Heat shock transcription factor 1 73 170 - -
Rops2g05185 413 Pfam HSF-type DNA-binding 80 169 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g05185 413 SMART hsfneu3 76 169 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops2g05185 413 MobiDBLite consensus disorder prediction 14 30 - -
Rops2g05185 413 ProSitePatterns HSF-type DNA-binding domain signature. 119 143 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05185 Rops-Chr2 92593684 92595564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05185 66 276 HSF AT2G26150 54.167 3.48e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops2g05185 HSF_DNA-bind 4.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05185 K09419 - gmx:100818430 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05185 2 92593684 92595564 Rops2g05185 2 92593684 92595564 ECH