Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05178 ATGTGCGGTGACGCCACCAACTGGGACGAAGATGCGTACAGGGAAAGTGTTCTGAAGGAGAGGGAGCTTCAAACTCAAACCGTTTTCCGAACCCTCTGGGCTCCACCCCAAAGCCCTAACCTTGATACTCTCCTTGTTGCCTCCAGTGACGGTTCCATCGCCTCCTACTCCATCCCTAACCCTAAGCTCAAAAATCCCTCTGATTTTATCCATCCCAACACTGATAAGGTGTTGGCTGAACCAAATTGCTTCATTCAAGCACATGATGGACCTGCTTATGATGTCAAATTCTATGGTGATAATGAAGATGCTCTGTTGCTGAGTTGTGGTGACGATGGTCGGATTCGAGGATGGAGATGGAAGGAACTTGCAAGCTCAACGTATTCTGTTTCTTCGCAAGGAAATGATATCACGCCTATACTTGATGTGGTGAATCCTCAACACAAAGGACCTTGGGGTGCACTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTAATACTCAGGGGGGATCTGTTTTTGCTGCCGCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTAAAAATGGTATTCAAGGGGCACTTGGACTACTTGCATTGTATAGTTGCTCGCAACTCATCCAATCAGATCATAACAGGTTCAGAGGATGGGACCGCACGAATTTGGGATTGCAAAAGTGGAAAATGTATCCAAGTGATTAATCCAGCAAAACATTGGAAGTTAAAAGGATCGGTTTCATGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGGAATATATCACTTTGGAACCTTCCAGCTTCAGAGTGCATATCAAGGATTTCAACTCATGCTTCTGTACAGGATATGTTATTTGACAATAATCAAATTTTGACTGTTGGGGCCGATCCTCTACTCAAACGCTATGACATGAATGGTGTGGTCCTTTCACAAATACAGTGTGCTCCTCCATCAGCTTTTTCTATCTCCTTACATCCAGCAGGGGTTGTGGCAGTTGGAGGTTATGGATGTCTTGTGGATGTTATCTCACAATTTGGCAGTCACATGTGCACATTTCATTGCCAATGTGTTTAG 1113 0.4474 MCGDATNWDEDAYRESVLKERELQTQTVFRTLWAPPQSPNLDTLLVASSDGSIASYSIPNPKLKNPSDFIHPNTDKVLAEPNCFIQAHDGPAYDVKFYGDNEDALLLSCGDDGRIRGWRWKELASSTYSVSSQGNDITPILDVVNPQHKGPWGALSPIPENNAIAVNTQGGSVFAAAGDSCAYCWDVETGKVKMVFKGHLDYLHCIVARNSSNQIITGSEDGTARIWDCKSGKCIQVINPAKHWKLKGSVSWVGCVALDASESWLACSSGRNISLWNLPASECISRISTHASVQDMLFDNNQILTVGADPLLKRYDMNGVVLSQIQCAPPSAFSISLHPAGVVAVGGYGCLVDVISQFGSHMCTFHCQCV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05178 370 Gene3D - 147 368 IPR015943 GO:0005515
Rops2g05178 370 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 369 IPR042626 -
Rops2g05178 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Rops2g05178 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Rops2g05178 370 SUPERFAMILY WD40 repeat-like 32 357 IPR036322 GO:0005515
Rops2g05178 370 Pfam WD domain, G-beta repeat 245 277 IPR001680 GO:0005515
Rops2g05178 370 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Rops2g05178 370 Gene3D - 33 138 IPR015943 GO:0005515
Rops2g05178 370 SMART WD40_4 151 186 IPR001680 GO:0005515
Rops2g05178 370 SMART WD40_4 280 316 IPR001680 GO:0005515
Rops2g05178 370 SMART WD40_4 189 228 IPR001680 GO:0005515
Rops2g05178 370 SMART WD40_4 239 277 IPR001680 GO:0005515
Rops2g05178 370 SMART WD40_4 78 119 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05178 Rops-Chr2 92533473 92541034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05178 164 233 Eukaryotic Initiation Factors Gene Family AT2G46280 34.286 3.26e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05178 K13175 K03257 gmx:100820024 674.47