Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05170 ATGAAGAAAGGAAGCATGGGCCTCAATCTCAATCTCAAACTCTCAGTTCCTGCACCTGATCAAGCTGCTTTTGCAAAGTTCCTGACTGAAAGTGGGACATTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTGAGAATTGTCTCTCAGAGTGAAGTGGAAGCTCCACCCCCAATCAAGGCAACAGACGACCAGTTAAGTTTGTCGGACATAGACGTAATCAAAGTTGTGGGAAAGGGAAATGGAGGGGTGGTGCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCATTAAAGGTAATTCAAATGAATATTGAGGAGTCTATGCGCAGGCAGATAGCACAAGAGCTGAAAATTAATCAATCAGCACAATGCCCTTATGTTGTTGTCTGCTACCAGTCATTCTATGATAATGGTGTCATATCAATTATCTTAGAGTACATGGATGGAGGTTCCTTAGCTGATCTTCTGAAGAAAGTTAAAACAATTCCGGAGCCTTATCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAGACATATTATCCACAGAGACTTGAAACCTTCTAATTTGTTGATAAATCACAGAGGTGAAGTAAAGATTACTGATTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAACACTTTCATTGGCACGTACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGCATGGCTACAACTACAAAAGTGACATATGGAGTTTGGGACTAATATTGCTTGAGTGTGCCATGGGGCGGTTTCCATATACACCACCTGATCAAAGTGAAAGATGGGAAAGTATTTTTGAGCTTATTGAAACTATCGTCGACAAACCTCCTCCTAGTGCTCCATCCGAACAGTTTTCTACAGAATTTTGCTCATTTATCTCAGCATGTCTGCAGAAAGACCCAAGGGATAGACTGTCGGCTCAGGAACTTATGAGACTTCCTTTTATCGACATGTATGAGGACTTAGATGTGGATCTTTCAGCTTACTTCTCCGATGCAGGATCTCCACTCGCAACCTTATATGAAAAGCAACACTTGCATATGGGCAGCGTTTGCAGATGA 1116 0.4194 MKKGSMGLNLNLKLSVPAPDQAAFAKFLTESGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKATDDQLSLSDIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRRQIAQELKINQSAQCPYVVVCYQSFYDNGVISIILEYMDGGSLADLLKKVKTIPEPYLAAICKQVLKGLMYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQHGYNYKSDIWSLGLILLECAMGRFPYTPPDQSERWESIFELIETIVDKPPPSAPSEQFSTEFCSFISACLQKDPRDRLSAQELMRLPFIDMYEDLDVDLSAYFSDAGSPLATLYEKQHLHMGSVCR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05170 371 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 16 338 - -
Rops2g05170 371 CDD PKc_MAPKK_plant_like 87 338 - -
Rops2g05170 371 SUPERFAMILY Protein kinase-like (PK-like) 65 339 IPR011009 -
Rops2g05170 371 Gene3D Phosphorylase Kinase; domain 1 47 151 - -
Rops2g05170 371 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Rops2g05170 371 Gene3D Transferase(Phosphotransferase) domain 1 152 362 - -
Rops2g05170 371 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05170 371 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Rops2g05170 371 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05170 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Rops2g05170 371 Pfam Protein kinase domain 74 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g05170 371 FunFam Mitogen-activated protein kinase kinase 6 153 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05170 Rops-Chr2 92436773 92440690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05170 1 329 MAP Kinase Kinase Gene Family AT4G29810 68.935 1.10e-174 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Rops2g05170 Pkinase 5.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05170 K20603 - gmx:100789734 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05170 2 92436773 92440690 Rops2g05170 2 92436773 92440690 ECH
Rops2g05170 2 92436773 92440690 Rops11g01805 11 29024003 29028319 PCT