Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g05168 | ATGGTTTGGTTTCAATGTGAAGATTGTGGAGACAACCTCAAAAAGCCCAAGTTACCTAGTCACTTTCGAACTTGCTCTGCTCACAAGTTGTCGTGCATTGACTGTGGCCAAATATTTGGGCGTGACACAGTTCAGGATCACACACAGTGTATTACTGAAGCGGAAAAGTATGGTCCAAAAGGCTTAAGCAAACCTTTGAATGGTGCAACTGCCAAGCCTAACAAGGATAGCAAGCAAAAGCCTGAAGTTGATATTAATGTGGGGTTGTCTGAACGGCCTCCATGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAACGCTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCTAAAGCCCGAGCATTTAATGCTTCAAAGCAACAGCCAGTCCAGACAGACAACTCTGCCCCTGATGCAAAGGTTGCAGTGGAGACTGTTCCTAATAACGAGGCAAGAGATGACAAAAATGCAGAGCTTAAAAAATTGCAAGAGTCTTCTGAACAAAATAACATGAAAGCAGGGAAGGAAGTTTCTTCAGCAAATAAAAAGAGGAAACTTGAAGCATTGGAGGGCGACCTTGTTAAAAAAGGCAGGAATGACGACACTTCAGTTGACATGGAAAATGGGGAAGTCATTCAGGGTGACAAGGAAATAGTAGAGAGCAATGCGAAGAAAGAAGGGATAGTAGAACCTCACAGTACAAGTGTTGTCAAAAATAAAATTAAATGGAAGAAGTTTATCAAATCAGCCTTGAAATCTCATTCTGATGGAGTTTTGAAGATGAAGAAACTGAGAAAAGTTGTTCTCAAAGCACTGCAGGAATCTGGCATTGTAGTGAATGAAACTGAATTGAGCGAGGCACTTGAGCAGAAGATCAATTCGAGCTCAAGATTTGTAGTTGAGAACAAGTATGTGCGATTGAAGGCCAAAGATTGA | 948 | 0.4156 | MVWFQCEDCGDNLKKPKLPSHFRTCSAHKLSCIDCGQIFGRDTVQDHTQCITEAEKYGPKGLSKPLNGATAKPNKDSKQKPEVDINVGLSERPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFNASKQQPVQTDNSAPDAKVAVETVPNNEARDDKNAELKKLQESSEQNNMKAGKEVSSANKKRKLEALEGDLVKKGRNDDTSVDMENGEVIQGDKEIVESNAKKEGIVEPHSTSVVKNKIKWKKFIKSALKSHSDGVLKMKKLRKVVLKALQESGIVVNETELSEALEQKINSSSRFVVENKYVRLKAKD* | 316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g05168 | 315 | Gene3D | Classic Zinc Finger | 72 | 125 | - | - | |
| Rops2g05168 | 315 | Pfam | Zinc-finger of C2H2 type | 95 | 119 | - | - | |
| Rops2g05168 | 315 | SUPERFAMILY | beta-beta-alpha zinc fingers | 82 | 127 | IPR036236 | - | |
| Rops2g05168 | 315 | Coils | Coil | 152 | 172 | - | - | |
| Rops2g05168 | 315 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 58 | IPR036236 | - | |
| Rops2g05168 | 315 | MobiDBLite | consensus disorder prediction | 151 | 166 | - | - | |
| Rops2g05168 | 315 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 27 | 51 | - | - | |
| Rops2g05168 | 315 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 26 | IPR036236 | - | |
| Rops2g05168 | 315 | MobiDBLite | consensus disorder prediction | 149 | 220 | - | - | |
| Rops2g05168 | 315 | MobiDBLite | consensus disorder prediction | 181 | 220 | - | - | |
| Rops2g05168 | 315 | MobiDBLite | consensus disorder prediction | 61 | 81 | - | - | |
| Rops2g05168 | 315 | SMART | ZnF_U1_5 | 92 | 126 | IPR003604 | GO:0003676|GO:0008270 | |
| Rops2g05168 | 315 | FunFam | UBP1-associated proteins 1C | 89 | 132 | - | - | |
| Rops2g05168 | 315 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 1 | 26 | - | - | |
| Rops2g05168 | 315 | Gene3D | - | 1 | 50 | - | - | |
| Rops2g05168 | 315 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 1 | 311 | IPR039999 | GO:0003677 | |
| Rops2g05168 | 315 | FunFam | cell growth-regulating nucleolar protein-like | 1 | 50 | - | - | |
| Rops2g05168 | 315 | Pfam | LYAR-type C2HC zinc finger | 30 | 57 | IPR014898 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops2g05168 | 79 | 144 | C2H2 Transcription Factor Family | AT2G19380 | 56.061 | 1.82e-17 | 81.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops2g05168 | K15263 | - | gmx:100790272 | 480.33 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops2g05168 | 2 | 92416522 | 92419531 | Rops2g05168 | 2 | 92416522 | 92419531 | ECH |