Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05162 ATGGATGCGCAGTACAACCCTCGTACAGTGGAAGAGGTTTTCAGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACTACTGATGTTGAAGAATTTTACCAGCAGTGTGATCCTGAAAAGGACAATCTTTGTCTATACGGGTTCCCCAATGAACAATGGGAAGTGAATTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCCGAACCTGCATTGGGCATAAACTTTGCTCGGGATGGGATGCAAGAAAAGGACTGGCTGTCTTTGGTTGCAGTTCATGGTGATGCATGGTTACTTGCAGTGGCTTTCTACTTCGGGGCTAGATTTGGTTTTGATAAAGCTGACAGGAAACGCTTGTTCACTCTGATTAATGATCTACCAACAATATTTGAGGTTGTGACTGGAACTGCAAAGAAACAGACTGAGGAAAAGTCATCAGTTTCAAACCTCACCAGCAACAAATCAAAGTCTGGTTCAAAAGGGCGAGTATCTGAATCTGGGAAGTATTCAAAACAAGCAAAGGACGAGGATGAAGGATTGGATGAAGAAGATGATGAGGAGCATGGGGAGACCTTGTGTGGCGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGTTGTGACCTATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCTAGGGCTGAGCACATTAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGTCCGGCCTTGA 747 0.4592 MDAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHGDAWLLAVAFYFGARFGFDKADRKRLFTLINDLPTIFEVVTGTAKKQTEEKSSVSNLTSNKSKSGSKGRVSESGKYSKQAKDEDEGLDEEDDEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRVRP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05162 248 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Rops2g05162 248 Pfam PHD-finger 195 244 IPR019787 -
Rops2g05162 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Rops2g05162 248 MobiDBLite consensus disorder prediction 143 188 - -
Rops2g05162 248 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Rops2g05162 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Rops2g05162 248 SMART PHD_3 194 242 IPR001965 -
Rops2g05162 248 CDD PHD_AL_plant 194 244 IPR044104 -
Rops2g05162 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Rops2g05162 248 MobiDBLite consensus disorder prediction 143 168 - -
Rops2g05162 248 FunFam PHD finger alfin-like protein 187 243 - -
Rops2g05162 248 PANTHER CPG BINDING PROTEIN 6 247 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05162 Rops-Chr2 92323825 92326739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05162 3 247 Alfin-like Transcription Factor Family AT3G42790 76.923 2.12e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Rops2g05162 Alfin 7.5e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05162 K26274 - gmx:100500110 466.848