Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05159 ATGCCCCTTTCAGTCGATGTTACCCCTCCACCCCCGCTGGATGGAGCTCCACTTGTTGTCAAATCCACCAAGCGCACATGCAATGTCGGCGTCGCAATCCATTCATCTTCACCTATCAAGCTAATTTGTTTCCTTTCTCTCACGAAAGTACCAGATCCCAAAGGTCAAGATCCGAGTATTGGCTATGTGGAAGGTTTAATCAAGCTGCTCCTCTTGTTGAATCATCCTGATAGTATGTACAATAGCTCACAAATTGATTGCAGTCACTCAATGGCTCGTGCTCCTTATCCCTATGGTGATCCTTTTTTTGGTGGTTCATTAGTTGCTTATGGACCACAAGCTATTCATCAACCCCAAGTGTTCCCCCCAATGACGGGATTAGCATCCACCAGAATTGCATTACCACTTGATCTTGCAGAAGATGGGCCCATTTATGTTAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAATCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAATCGCAAGCCATATCTTCATGAGTCCCGGCACCGCCATGCATTGAAAAGGGTTAGGGGATCCGGGGGACGCTTTCTTAGCGCCAAACAGATGCAACGGTCCAATACTGAACTTGTCACTGATGCCCATTCAGGCTCAGACCCTGTCAACGTTTATCAAAAGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAATAACTGGAGAAAATGTATCTTCTATCACAACTTGCTCTGGCCTAACAATTATGTCTAGTAACAGTGTCAATTTTAGGCAGCCTGAGTACAAGTTCTTGGGGAACTCCCCAAACATGAATGGAGCATCACAATGCAATGGGGGCCTCACCTTTGGTGGTGGAACTCAGCATTGTGCTCCAGTTGGCAGGTGA 903 0.4596 MPLSVDVTPPPPLDGAPLVVKSTKRTCNVGVAIHSSSPIKLICFLSLTKVPDPKGQDPSIGYVEGLIKLLLLLNHPDSMYNSSQIDCSHSMARAPYPYGDPFFGGSLVAYGPQAIHQPQVFPPMTGLASTRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALKRVRGSGGRFLSAKQMQRSNTELVTDAHSGSDPVNVYQKKDASEVESHPSITGENVSSITTCSGLTIMSSNSVNFRQPEYKFLGNSPNMNGASQCNGGLTFGGGTQHCAPVGR* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05159 300 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 78 251 IPR001289 GO:0003700|GO:0006355
Rops2g05159 300 ProSitePatterns NF-YA/HAP2 subunit signature. 145 165 IPR018362 GO:0003677|GO:0016602
Rops2g05159 300 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 143 197 IPR001289 GO:0003700|GO:0006355
Rops2g05159 300 Gene3D - 140 202 - -
Rops2g05159 300 SMART cbf3 139 200 IPR001289 GO:0003700|GO:0006355
Rops2g05159 300 PRINTS CCAAT-binding transcription factor subunit B signature 174 197 IPR001289 GO:0003700|GO:0006355
Rops2g05159 300 PRINTS CCAAT-binding transcription factor subunit B signature 143 165 IPR001289 GO:0003700|GO:0006355
Rops2g05159 300 ProSiteProfiles NF-YA/HAP2 family profile. 140 200 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05159 Rops-Chr2 92288823 92295984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05159 83 206 CCAAT-HAP2 Transcription Factor Family AT1G17590 59.524 8.74e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops2g05159 CBFB_NFYA 4.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05159 K08064 - gmx:100792905 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05159 2 92288823 92295984 Rops2g05159 2 92288823 92295984 ECH