Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05154 ATGTTCTCTCACTTGTTCTTCTCCCATTTTTCTTTACCTGTTTCCCACCAAAATCCAAAGATGGGTGATTTACAAGGCTCCTTCAGAGTGTCACCTCCTCCTTCTCCCTCTTCCTCAGATAAATCAAACCTACCCATGTTATATTATGGTCTAGTAGTGGTAGCAACAGCAGCCATAGCATTAGCACTATACAACCTCATCATCATAAAACGAAGCAGGAGGCACCACATGCAATCACAACCAAATGGGTTGGTTGAAGTGGTCATGGAAAGTAGCTTTGAGAATTCCCAAAGAAGCTTGCTCTCATCAAGCTTCAAGTATAAGAAAGAAGCAGGAAAAGAAGGTGGTGGTGGGGATGATTATGAATGCCCAGTTTGTTTATCTGCTTTTGAAGAAGGGGAAGAAGTGAGGAAGCTACCACGTTGCAAACACTCATTTCATGCTCTATGCATAGACATGTGGCTTTACTCTCACTTTGATTGCCCTATTTGTCGGACACCCGTTGGCCCATTTTGTCACCGTTTTCCGCCGGAGAATTCTCGTCACCGATTGCCGGAATCTGGTGTGGCATCTCAGTTTGATTTGTGA 588 0.4405 MFSHLFFSHFSLPVSHQNPKMGDLQGSFRVSPPPSPSSSDKSNLPMLYYGLVVVATAAIALALYNLIIIKRSRRHHMQSQPNGLVEVVMESSFENSQRSLLSSSFKYKKEAGKEGGGGDDYECPVCLSAFEEGEEVRKLPRCKHSFHALCIDMWLYSHFDCPICRTPVGPFCHRFPPENSRHRLPESGVASQFDL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05154 195 CDD RING-H2_EL5-like 122 165 - -
Rops2g05154 195 Pfam Ring finger domain 122 165 IPR001841 -
Rops2g05154 195 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Rops2g05154 195 FunFam RING-H2 finger protein ATL1 83 170 - -
Rops2g05154 195 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 37 168 IPR044675 -
Rops2g05154 195 SUPERFAMILY RING/U-box 118 177 - -
Rops2g05154 195 SMART ring_2 123 164 IPR001841 -
Rops2g05154 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 169 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05154 Rops-Chr2 92240592 92241179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05154 51 168 C3H Transcription Factor Family AT5G17600 39.535 1.33e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05154 - - gmx:102668213 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05154 2 92240592 92241179 Rops2g05154 2 92240592 92241179 ECH