Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05152 ATGTCGGTGAATCTGACGCCCAATGCGATTCCGGCGATCGTTGCCGGCGACATGAACTCGAAGCCGCTGGTGCAGGTTTTAGATATCAAGTTGATTTCGAATAGCAAGCAACAGGAGAGGTACCGCATTTCGCTTTCCGATGCCGTTTCCTCTCAACACGCCGTGCTCGCGACTCAGCTCAACGACCAAGTCCAAACCGGACGAGTTAAGAAAGGTTCCGTAGTTCAACTGATCGAGTACATTTGCAGTCCTATTCAGAATCGCAAGATTATTGTGGTGCTGAACATGGAAACCATAATACCAGAATGCGAGGTCATTGGAAATCCGAAGTCATTTGTGGAATCTGAATTACCAACTCAGGAAGCATTAACTGATAACAATATGCAGAAATCATCCAGGAGTGATAATTATCATCTGCCAGCTCAAGATACAAGTTGTAATGTGCAGAATTTCCGGCCAACTGTTCAACCTCCAATCCAACCACCTTCATTTTACAAAAGCCATGGTGTAATTGTGAAAAATGAGGCACCGGCACGTATTATTCCAATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTAACTGCAAAAGGGGATATACGCCGATATAATAATGCTCGGGGAGATGGGAAGGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATTCGAGTAACCTGCTTTAATGCGGTTGTTGATCACTTTTATGATGCAATCGAGGTTGGTAGAGTTTACTTGATATCCAAAGGTAGCTTGAAACCCGCACAGAAGAACTTCAACCATTTGAAGAATGAATGGGAAATTTTGTTGGATTTGGCATCAACTGTTGAACTTTACCCAGATGAAGATAGTTCTATACCTAGACAGCAATTCTCCTTTAGGCCTATAAGTGATATTGAGAATGTTGACAGCAACTCCATACTTGATGTTATTGGGGTTGTGACATCTGTGAATCCATCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAATTTTGAATCTAAAGGACTGTTCTGGCAGGAGTGTTGAGCTAACCCTTTGGGGTGAATTTTGCAACAGGGAAGGGCAAAAGTTGCAAGAGATGGTGGATGCTGGGTTTTTCCCCATTCTGGCAGTCAAATCTGGGAAAGTCAATGACTTCAGTGGGAAATCTGTAGGGACTATTTCTGCTACACAGCTTTTCATAAATCCATATTTCTCTGAGGCACGTAGCTTAAGGGACTGGTTTGATCGAGAGGGAAAAGACTCTGCTTCTCTGTCCATCTCTAAGGACATTATACTTGGAGGACCTAAAAATGATGTGCGTAAAACTGTGTCTCGGATCAAGGATGAAGGTCTGGGGCGGTCAGATAAGCCGGATTGGATAACAGTGAAGGCAACAATATCTTTCATCAAGACAGATACATTTTGTTACACGGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAACAAGAAAGTGACTAGATCAGGAAATACAAGATGGCAATGTGATCGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATATCTTCTTCAAGCTCAAATTATGGATCATACTGGAATAACTTGGGTAACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTTACTCAGCAAAGGAGCTGTACTTGTTGAAGTGTGAACAGCAGGATGATGAAAAGTTTGAAGGAATAATCAAGAGTAGACTGTTCAACCAATTTATCTTCAGGCTAAAAATTAAAGAGGAACTGTATGGTGATGAACAGAGGGTGAAGATTACAGTAGCTAAGGCAGGTCAGGTGGATTATTCTTCGGAGAGTGGATACATGCTTAATTTGATTTCAAAGTTTTTATAG 1875 0.4251 MSVNLTPNAIPAIVAGDMNSKPLVQVLDIKLISNSKQQERYRISLSDAVSSQHAVLATQLNDQVQTGRVKKGSVVQLIEYICSPIQNRKIIVVLNMETIIPECEVIGNPKSFVESELPTQEALTDNNMQKSSRSDNYHLPAQDTSCNVQNFRPTVQPPIQPPSFYKSHGVIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDIRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDHFYDAIEVGRVYLISKGSLKPAQKNFNHLKNEWEILLDLASTVELYPDEDSSIPRQQFSFRPISDIENVDSNSILDVIGVVTSVNPSVPILRKNGMETQRRILNLKDCSGRSVELTLWGEFCNREGQKLQEMVDAGFFPILAVKSGKVNDFSGKSVGTISATQLFINPYFSEARSLRDWFDREGKDSASLSISKDIILGGPKNDVRKTVSRIKDEGLGRSDKPDWITVKATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQIMDHTGITWVTAFQESGEEILGYSAKELYLLKCEQQDDEKFEGIIKSRLFNQFIFRLKIKEELYGDEQRVKITVAKAGQVDYSSESGYMLNLISKFL* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05152 624 Gene3D - 292 431 IPR012340 -
Rops2g05152 624 NCBIfam replication factor-a protein 1 (rpa1) 4 622 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops2g05152 624 SUPERFAMILY Nucleic acid-binding proteins 446 623 IPR012340 -
Rops2g05152 624 CDD RPA1_DBD_C 449 622 IPR047192 -
Rops2g05152 624 Gene3D - 3 113 IPR012340 -
Rops2g05152 624 FunFam Replication protein A subunit 431 623 - -
Rops2g05152 624 SUPERFAMILY Nucleic acid-binding proteins 297 425 IPR012340 -
Rops2g05152 624 FunFam Replication protein A subunit 4 113 - -
Rops2g05152 624 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Rops2g05152 624 Pfam Replication protein A OB domain 303 407 IPR031657 -
Rops2g05152 624 CDD RPA1_DBD_B 314 421 - -
Rops2g05152 624 Pfam Replication factor-A C terminal domain 465 614 IPR013955 -
Rops2g05152 624 Pfam OB-fold nucleic acid binding domain 194 272 IPR004365 GO:0003676
Rops2g05152 624 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Rops2g05152 624 Gene3D - 436 624 IPR012340 -
Rops2g05152 624 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Rops2g05152 624 Gene3D - 179 288 IPR012340 -
Rops2g05152 624 PANTHER REPLICATION FACTOR A 1, RFA1 193 599 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops2g05152 624 CDD RPA1_DBD_A 182 285 - -
Rops2g05152 624 FunFam Replication protein A subunit 179 288 - -
Rops2g05152 624 SUPERFAMILY Nucleic acid-binding proteins 179 292 IPR012340 -
Rops2g05152 624 FunFam Replication protein A subunit 292 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05152 Rops-Chr2 92235095 92237893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05152 26 622 Core DNA Replication Machinery Family AT2G06510 68.293 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05152 K07466 - cave:132165585 1004.97