Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05148 ATGGGGAGAAGTCCTTGTTGTTCAAAAGAGGGCTTGAACAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCAGAGAGTACATTAGGGTCCATGGTGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTTAGATGGTTGAATTATCTCAGACCAGATATTAAAAGAGGCAATATATCTTCAGATGAAGAAGAGCTTATCATCAGGCTTCACAATCTACTAGGAAACAGGTGGTCTCTAATAGCTGGAAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAATTACTGGAACACCAATTTAGGTAAAAAGGTTAAAGATCTTCACCAAACCAGCACTCCTTCTCGTAGAGTCTCTGTTCAACAACAACCCAATGGAAAGAACACACAGAATCCAAAGCCTCAATTAACCACCATGGTCACTCCCTCCCCATCACCATCTCCTCCTAAGCTAGACTCCAATGTGGTCCGTACAAAAGCTACCAAGTGCTCCAAGGTCTTGCTCATAAACTCACTTCCTAACCCATCAATGCAATTGCAGAACAAGTCAGAAGAAGCAGAACCAATGCCATTGCCTGTGGATGCTATTGTTAGCAGTAATTCAATGAGTAACCAAATGGAACCCAAGAATGAGTTTTTATCATTTCCCAGTGAAGAAAAAGAATTATCAACAGATTTGCTCATTGATTTTAACGTGGGGGATGTTTGCTTATCTGATCTTCTCAACTCAGATTTCTCAAATATGTGCAACAATAACATTAACATCCCCGAGGCATTATCACCTTGTTCGGACCAGCCTCCTATGTTCACTGATGAAATTCTCAAGGACTGGACACAAATCAATTTTGGTGATGAAACAAATGTGTCCAACAACCTTCATTCTTTCACCTCGTTTCTTGAGTCCGGTGAGGAAATACTAGGAGAATAA 960 0.4115 MGRSPCCSKEGLNRGAWTAHEDKILREYIRVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLHQTSTPSRRVSVQQQPNGKNTQNPKPQLTTMVTPSPSPSPPKLDSNVVRTKATKCSKVLLINSLPNPSMQLQNKSEEAEPMPLPVDAIVSSNSMSNQMEPKNEFLSFPSEEKELSTDLLIDFNVGDVCLSDLLNSDFSNMCNNNINIPEALSPCSDQPPMFTDEILKDWTQINFGDETNVSNNLHSFTSFLESGEEILGE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05148 319 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops2g05148 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g05148 319 Gene3D - 14 66 - -
Rops2g05148 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops2g05148 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g05148 319 MobiDBLite consensus disorder prediction 115 149 - -
Rops2g05148 319 CDD SANT 16 61 IPR001005 -
Rops2g05148 319 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 190 - -
Rops2g05148 319 FunFam Transcription factor TT2 70 142 - -
Rops2g05148 319 Gene3D - 70 144 - -
Rops2g05148 319 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops2g05148 319 SMART sant 13 63 IPR001005 -
Rops2g05148 319 SMART sant 66 114 IPR001005 -
Rops2g05148 319 CDD SANT 71 112 IPR001005 -
Rops2g05148 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g05148 319 MobiDBLite consensus disorder prediction 115 166 - -
Rops2g05148 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g05148 319 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05148 Rops-Chr2 92163141 92164423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05148 1 161 MYB Transcription Factor Family AT5G49330 52.198 2.58e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g05148 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05148 K09422 - gmx:100802704 456.447