Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05143 ATGATGAATGGAAGGAACAGGTTCCCCTTTACTCCATCTCAGTGGCAAGAGCTTGAACACCAAGCTCTTATCTACAAATACATGGCTTCAGGTATTTCCATCCCACCTGATCTTCTCTTCACCATCAAAAGAAGCTACTTGGACTCTCCTTTGTCTTCAAGGCTCTTAGCTCACCAGCCTCAACACTTTGGGTGGAACTATTTGCCAATGGGTTTGGGAAGAAAAATAGACCCAGAACCAGGAAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGCTCAAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGACACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCACCACCGACAGCAACAAACACAGATGCTTCAATCTTATCAATCAACAAAAATAATCCTGCACTAACCCCAACCACTCATTCTCTCTCACCTCTTACAACATCCCATGACACTTACCATCACCCTCAACATTCTTCTTATGGTTCATCTTCCAATCTCCATCACTCCTTCCTCTACCACCCCTCACCTTCAAAGCCTTCTTCTGGTGTTGGTTTGTCTTTTCAAGACAACAGTGCTCCCTTGTTTCTTGACACTGGTTCTTGCTCTCACAATAATAACAACACTGACTGCAGGTATGTTTATGGACTGAAAGAGGAGGTGGATGAACATGCTTTCTTCACTGAACCTTCTGGAACTATGAGAAGTTTCTCAGCTTCCTCTATGGATGACTCTTGGCAACTCACACCACTGACTATAAGCTCCTCATCATCTTCCAAACAGAGAAACTGCTCTGCTTTATCAAATTCCAATGACAACAATGAGTACTCCTACTTGCAACTTCAAAGCCTTAGTGATAACTCAAAACAACCACAACAAGATCAGGGTTGCTACATATCTGGCAATGATATCAAAGGTGAAACATTCATGAAACTTGGAAAGGAAGAACATCAGAAAACCGTTCATCGTTTCTTTGATGAATGGCCACCCAAAAGTAGAAGCTCATGGCTTGATTTGGATGATAAATCATCAACCACTCAGCTTTCAATTTCCATTCCCACATCTTCTCATGATTTCACAACTTTCAGTTCCACAAACCAACGAGATGGTTGA 1146 0.4223 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYLDSPLSSRLLAHQPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPPPTATNTDASILSINKNNPALTPTTHSLSPLTTSHDTYHHPQHSSYGSSSNLHHSFLYHPSPSKPSSGVGLSFQDNSAPLFLDTGSCSHNNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMDDSWQLTPLTISSSSSSKQRNCSALSNSNDNNEYSYLQLQSLSDNSKQPQQDQGCYISGNDIKGETFMKLGKEEHQKTVHRFFDEWPPKSRSSWLDLDDKSSTTQLSISIPTSSHDFTTFSSTNQRDG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05143 381 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops2g05143 381 PANTHER GROWTH-REGULATING FACTOR 5 8 369 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops2g05143 381 MobiDBLite consensus disorder prediction 125 175 - -
Rops2g05143 381 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Rops2g05143 381 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops2g05143 381 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops2g05143 381 Pfam WRC 78 120 IPR014977 -
Rops2g05143 381 MobiDBLite consensus disorder prediction 263 282 - -
Rops2g05143 381 MobiDBLite consensus disorder prediction 108 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05143 Rops-Chr2 92121886 92124016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05143 7 315 GRF Transcription Factor Family AT3G13960 40.663 1.62e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops2g05143 WRC 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05143 - - gmx:100783524 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05143 2 92121886 92124016 Rops2g05143 2 92121886 92124016 ECH
Rops2g05143 2 92121886 92124016 Rops11g01827 11 29456330 29458325 PCT