Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05118 ATGTCGAGCTCATCGGAATTTTCAAGGTTTTCCGGCCACCATCCGGCTAAGTCGTCGGAGAAATCCACGTTCTCTCAGACTTGCAGTCTATTGAGCCAATACCTCAAGAAGAAGGGCAGCTTCAGAGACCTTAGCCTCGGGATAACATGCAACATCGAAACAAATGGATCCCCCGAAACATCATGTTACTCTGCAACAACCATGGAGTTTTTTCCTACAAACCTGACACCACAAAGCCAAACAACTATGGATTTGCTCAATCTGCGGGTTGCTTATCCTCAACATACTGATGTTCCAACCTTGGTGAACCCAAGTGAGTTGAAGTCTATGGGCAAGGAGCCTAAAGCTGCACAATTGACAATCTTTTATGCTGGAAAAGTTATGGTGTTTGATGATTTTCCCGCTGACAAAGTAGAGGAGATAATGTCATTTGCCCGTAAAGGAATCCCCCAAAGCCAGAAATCTCCTGCATATGCTCACACTCAGAGTCAGCCTTCAATTATTCCTAATTTGATGCCTCAAGCACCTTCCAGACCAATTGTTTGTGACCCACCAATTGCTAGGAAAGCTTCACTTCATAGGTTCCTGGAGAAGAGGAAAGATAGAATTTCTGCCAAAGCACCATATCAAACTAGCAATTCCATCTTGGCCACTAATAATAATAAGCAGGCTGAATCCATATCATGGCTTGGGTTAGGTGCTAAATCAACACAAATCTGA 720 0.4375 MSSSSEFSRFSGHHPAKSSEKSTFSQTCSLLSQYLKKKGSFRDLSLGITCNIETNGSPETSCYSATTMEFFPTNLTPQSQTTMDLLNLRVAYPQHTDVPTLVNPSELKSMGKEPKAAQLTIFYAGKVMVFDDFPADKVEEIMSFARKGIPQSQKSPAYAHTQSQPSIIPNLMPQAPSRPIVCDPPIARKASLHRFLEKRKDRISAKAPYQTSNSILATNNNKQAESISWLGLGAKSTQI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05118 239 Pfam Jas motif 185 210 IPR018467 -
Rops2g05118 239 ProSiteProfiles Tify domain profile. 112 147 IPR010399 -
Rops2g05118 239 MobiDBLite consensus disorder prediction 1 20 - -
Rops2g05118 239 SMART tify_2 112 147 IPR010399 -
Rops2g05118 239 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 215 IPR040390 -
Rops2g05118 239 Pfam tify domain 113 145 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05118 Rops-Chr2 91767701 91770237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05118 1 235 Tify Gene Family AT1G19180 39.764 5.53e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops2g05118 tify 7.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05118 K13464 - gmx:100802800 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05118 2 91767701 91770237 Rops2g05118 2 91767701 91770237 ECH