Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05117 ATGTCGAGCTCATCGGAGTTTTTCGGATTTTCCAGCCACCAGCCGGCGAAGTCATCGGAGAAGTCCACGTTCTCTCAGACTTGCAGTCTATTGAGCCAATACCTCAAGAAGAAGGGCAGCTTCAGAGACCTTAGCCTCGGGATAACATGCAACATCGAAACAAATGGTTCTCCTGAGGCATCATGTCACTCTGCAACAACCTTGGAGATTTTTCCTACAAATGTCACACCACAAAGCCTTACAACTACGGATTTGCTCAATCTGCGGCTTGATTATCCTCAACATACCGAGGTTCCAACCTTGGTAAACTCAAGTGCTTTTGAGTCCATGGGCAAGGAGCCTAAAGCTGCACAGTTGACAATCTTTTATGCTGGGAAAGTGATGGTGTTTGATGATTTTCCCGCTGAGAAAGTTGAAGAGATAATGTCATTTGCCCGCAATGGAAGCCCTCAAAGCCAAAGCCAGAACCCATCTGTATATGCTCACACTCAGAGTCAGCCTTCGGTTACTCCTAACATGATGCCTCAAGCACCTTCCAAACCCATTGTTTGTGATCTACCAATTGCTAGAAAAGCTTCACTTCATCGGTTCCTGGAGAAGAGGAAAGATAGAATTGCTGCCAAAGCACCATATCAAACAAACAATCCCATCTCGGCCCCTAATAAGCCGGTTGAATCCATTTCATGGCTTGGTTTAGGTGCTAAATCAACACAAATCTGA 720 0.4556 MSSSSEFFGFSSHQPAKSSEKSTFSQTCSLLSQYLKKKGSFRDLSLGITCNIETNGSPEASCHSATTLEIFPTNVTPQSLTTTDLLNLRLDYPQHTEVPTLVNSSAFESMGKEPKAAQLTIFYAGKVMVFDDFPAEKVEEIMSFARNGSPQSQSQNPSVYAHTQSQPSVTPNMMPQAPSKPIVCDLPIARKASLHRFLEKRKDRIAAKAPYQTNNPISAPNKPVESISWLGLGAKSTQI* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05117 239 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 15 220 IPR040390 -
Rops2g05117 239 MobiDBLite consensus disorder prediction 147 175 - -
Rops2g05117 239 ProSiteProfiles Tify domain profile. 112 147 IPR010399 -
Rops2g05117 239 MobiDBLite consensus disorder prediction 147 177 - -
Rops2g05117 239 Pfam Jas motif 187 212 IPR018467 -
Rops2g05117 239 SMART tify_2 112 147 IPR010399 -
Rops2g05117 239 Pfam tify domain 113 145 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05117 Rops-Chr2 91745488 91747399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05117 1 235 Tify Gene Family AT1G19180 39.689 1.95e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops2g05117 tify 5.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05117 K13464 - gmx:100802800 329.331