Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops2g05116 | ATGCAGCCACAGAGGTTAAGGCAGCATGCCATGATGCAGCACTCTCTCTATCCCCACCCTGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTGGGCAACATTCATCCTCAGGTTACAGAGGCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGTGCCCTTGAAGGATGCAAGCTTATTCGGAAAGAGAAGTCATCTTATGGCTTTGTGGACTACTTTGATCGCAGTTCAGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATTTTTGGACAGCCTATTAAAGTCAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGCCACTTTAATATTTTTGTGGGTGACCTTAGTCCTGAGGTTACAGATGCAACGTTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCAGATGCAAAGGTCATGTGGGATCAGAAGACAGGCCATTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCTCAAAGCGCCATAAATGATTTAACTGGTAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCCACAAAAGGGGCTAACTCCAATGAAGAAAAGCAGAGTTCAGATTCCAAAACTGTTGTGGAATTGACTAATGGAACATCTGAAGAAGGCCAAGAAGTTACCAATGATGATGCTCCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTCCTCCAGAGGTCACTTCTGTTGATCTCCATCATCATTTTCATGCTCTTGGTGCTGGAACTATTGAAGATGTCAGGGTGCAACGAGACAAAGGCTTTGGGTTTGTGCGATACAGTACCCATGATGAAGCTGCTCTTGCTATACAGATGGGAAATGCTCGGATTCTGTATGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCAACTCCACCAGGAACAGCCTCTACTCCTCTTCCCCCACCTACTTCTGCACATGTGCCAGGCTTTTCACTCGGTGGTCTTGTGGCGTATGAACGCCAGATGGCACTGAGCAAAATGAGTGGTGCACATGCCCTCATGCATCAGCAGGGTCAACATGCCCTAAAACAGGCAGCAATGGGAATGGGTGCCCCTGGGGCTGCTTATGATACTGGATTCCAGAATGTTGCGACCACCCAGCACCTAATGTATTATCAGTAA | 1236 | 0.4636 | MQPQRLRQHAMMQHSLYPHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEALLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDAKVMWDQKTGHSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNEEKQSSDSKTVVELTNGTSEEGQEVTNDDAPEKNPQYTTVYVGNLPPEVTSVDLHHHFHALGAGTIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILYGKPIKCSWGSKPTPPGTASTPLPPPTSAHVPGFSLGGLVAYERQMALSKMSGAHALMHQQGQHALKQAAMGMGAPGAAYDTGFQNVATTQHLMYYQ* | 412 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops2g05116 | 411 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 129 | 224 | - | - | |
Rops2g05116 | 411 | MobiDBLite | consensus disorder prediction | 209 | 249 | - | - | |
Rops2g05116 | 411 | SMART | rrm1_1 | 253 | 322 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | SMART | rrm1_1 | 132 | 205 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | SMART | rrm1_1 | 47 | 116 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 326 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | Gene3D | - | 39 | 124 | IPR012677 | - | |
Rops2g05116 | 411 | Gene3D | - | 229 | 330 | IPR012677 | - | |
Rops2g05116 | 411 | SUPERFAMILY | RNA-binding domain, RBD | 123 | 217 | IPR035979 | GO:0003676 | |
Rops2g05116 | 411 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 124 | IPR035979 | GO:0003676 | |
Rops2g05116 | 411 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 238 | 326 | - | - | |
Rops2g05116 | 411 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | CDD | RRM2_PUB1 | 130 | 209 | - | - | |
Rops2g05116 | 411 | SMART | rrm2_1 | 132 | 205 | IPR003954 | GO:0003676 | |
Rops2g05116 | 411 | SMART | rrm2_1 | 253 | 322 | IPR003954 | GO:0003676 | |
Rops2g05116 | 411 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | FunFam | Oligouridylate-binding protein 1C | 229 | 330 | - | - | |
Rops2g05116 | 411 | SUPERFAMILY | RNA-binding domain, RBD | 243 | 332 | IPR035979 | GO:0003676 | |
Rops2g05116 | 411 | Gene3D | - | 125 | 224 | IPR012677 | - | |
Rops2g05116 | 411 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 320 | IPR000504 | GO:0003723 | |
Rops2g05116 | 411 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 114 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops2g05116 | Rops-Chr2 | 91735184 | 91743945 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops2g05116 | 42 | 320 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 27.703 | 1.92e-21 | 94.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops2g05116 | K13201 | - | gmx:100813736 | 758.444 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops2g05116 | 2 | 91735184 | 91743945 | Rops2g05116 | 2 | 91735184 | 91743945 | ECH |