Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05111 ATGGTGAAGCCCAACAGTGAGAAACCTGAGGAGAAAAACGATTCACCTTACAGAGGGATCCGAAAGAGGAAATGGGGCAAATGGGTATCCGAAATTAGACTACCCAACAGTCGTCAGAGGATTTGGTTGGGTTCCTACGACTCTGCCGAAAAGGCGGCTCGTGCTTTCGACGCTGCAATGTTCTGCTTACGTGGCAGAAACGCGAGGTTCAATTTCCCCCATAACCCACCCGATATCGCTGGCGGAAGAAACATGACACCCTCTCAAATTCGAGCAGCTGCAGCCCGTTTTGCCAATTCGGAGCCCCGTGAGGGTCATTCGGGTCGACCCGATATAAACGAATCATCGCCCATGGAATGTTCATCGGAGGGAACACTTTTACAAATGGAGTCTCCTTCGCCTTCTGTTTCTGAAGGAACTGTCCAAACGGATAGTGACGTCCCACTTAACGGTTCGTTACCGGATATGTTCACTCCGATCGGGTCGAATGATTATAATTCGGGTTATGGGATTTTTCCGGGTTTTGATGATTTTAGCGGTGATTTTTACGTGCCGGAAATGCCAAGTGTTGATTATGGGGAAGAGAACATGGAGGGGTTTATAGTTGATGACACTTTCTTGTGGAATTTCTAA 633 0.4803 MVKPNSEKPEEKNDSPYRGIRKRKWGKWVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGRNARFNFPHNPPDIAGGRNMTPSQIRAAAARFANSEPREGHSGRPDINESSPMECSSEGTLLQMESPSPSVSEGTVQTDSDVPLNGSLPDMFTPIGSNDYNSGYGIFPGFDDFSGDFYVPEMPSVDYGEENMEGFIVDDTFLWNF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05111 210 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Rops2g05111 210 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Rops2g05111 210 MobiDBLite consensus disorder prediction 98 143 - -
Rops2g05111 210 MobiDBLite consensus disorder prediction 1 20 - -
Rops2g05111 210 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Rops2g05111 210 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Rops2g05111 210 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Rops2g05111 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 122 - -
Rops2g05111 210 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Rops2g05111 210 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Rops2g05111 210 Pfam AP2 domain 17 65 IPR001471 GO:0003700|GO:0006355
Rops2g05111 210 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Rops2g05111 210 MobiDBLite consensus disorder prediction 114 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05111 Rops-Chr2 91666308 91667388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05111 15 210 AP2-EREBP Transcription Factor Family AT1G19210 50.249 1.14e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops2g05111 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05111 - - gmx:732656 327.02