Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05110 ATGAATCCACAATTAGGGTTGGAACCCTATGAGGAGCATACTTTTGATAAGTTAGGAGAAGAAGGTACTCCAATGGCGACCTCTCAGCTCAATGCATCATCGATTTCTACGAGGAGCTTGCCATCCTTTGAAGGGTTTCGACCTTCAGTGCTTCAATTTCCTTGTGTGAGAATCGCCACTCTCTCTCAAAGGTCCTTCCCCTCTCTGGTTGTCAAAGCTGCCACGGTTGTTGCCCCAAAGCACACCTCTGTTAAGCCACTGGGTGATAGAGTACTGGTAAAAATTAAGGATGCAGAAGAGAAGACTGAGGGTGGGATTTTACTGCCAACAACTGCTCAAAGCAAGCCTCAAGGTGGTGAGGTGGTTGCTGTTGGAGAAGGGAAATCAGTTGGGAAAAGCAAAGTGGAGACTAGTGTGAAGACAGGCACACAAGTGGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATAGTTCCAAACATCTTATACTGAAGGATGATGACATCATTGGTATCCTTGAAACTGACGAGGTCAAGGATCTTAAACCCTTGAATGATAGAGTCTTGATAAAGGTTGCAGAAGCAGATGAAAAAACTGCTGGGGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAACCATCCATTGGCACAGTTATAGCAGTTGGTCCAGGGCCTCTGGATGAGGAAGGCAACAGAAAACCATTGTCCATTACAGCTGGGAATACAGTTCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGTAAAGATGGTTCCAACTACATTGCTTTGAGGGCCTCAGATGTCATGGCTGTCCTCTCCTAG 828 0.4614 MNPQLGLEPYEEHTFDKLGEEGTPMATSQLNASSISTRSLPSFEGFRPSVLQFPCVRIATLSQRSFPSLVVKAATVVAPKHTSVKPLGDRVLVKIKDAEEKTEGGILLPTTAQSKPQGGEVVAVGEGKSVGKSKVETSVKTGTQVVYSKYAGTEVEFNSSKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVAEADEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSITAGNTVLYSKYAGNDFKGKDGSNYIALRASDVMAVLS* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05110 275 Gene3D GroES chaperonin 77 176 IPR037124 GO:0006457
Rops2g05110 275 Gene3D GroES chaperonin 177 275 IPR037124 GO:0006457
Rops2g05110 275 FunFam 20 kDa chaperonin, chloroplastic 77 176 - -
Rops2g05110 275 SUPERFAMILY GroES-like 181 274 IPR011032 -
Rops2g05110 275 SUPERFAMILY GroES-like 82 175 IPR011032 -
Rops2g05110 275 Hamap Co-chaperonin GroES [groES]. 83 175 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 SMART Cpn10_2 181 274 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 SMART Cpn10_2 83 174 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 ProSitePatterns Chaperonins cpn10 signature. 84 108 IPR018369 GO:0005524|GO:0006457
Rops2g05110 275 CDD cpn10 83 174 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 PIRSF Cpn21 25 275 IPR017416 GO:0006457|GO:0046914|GO:1901671
Rops2g05110 275 PRINTS 10kDa chaperonin signature 84 99 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 PRINTS 10kDa chaperonin signature 140 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 PRINTS 10kDa chaperonin signature 161 174 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 PRINTS 10kDa chaperonin signature 106 127 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 ProSitePatterns Chaperonins cpn10 signature. 182 206 IPR018369 GO:0005524|GO:0006457
Rops2g05110 275 CDD cpn10 182 274 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 PANTHER 10 KDA HEAT SHOCK PROTEIN 179 273 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 Hamap Co-chaperonin GroES [groES]. 181 275 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 Pfam Chaperonin 10 Kd subunit 84 173 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 Pfam Chaperonin 10 Kd subunit 182 273 IPR020818 GO:0005524|GO:0006457|GO:0044183
Rops2g05110 275 FunFam 10 kDa chaperonin 179 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05110 Rops-Chr2 91654522 91658496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05110 25 275 Calmodulin-binding Proteins AT5G20720 74.308 1.02e-134 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05110 K04078 - gmx:100804915 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05110 2 91654522 91658496 Rops2g05110 2 91654522 91658496 ECH