Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05109 ATGAAGGCTCCATCCAATTGTTACTTGCCAAATTCTGGCGAAGGGGAAAGGAAGACCATAAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTAGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATACCCAGCTACCCCAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCCTTGCATGCTGATCCTGAAACTGACGAGGTCTATGCACAGATGACCCTTCAACCAGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGACATTGGTCTCAAACAAAATCGACAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGTACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCTGCTCAGGAGCTCGTTGCAAAAGATTTGCATGACTATACATGGGCATTTAGACATATTTATCGAGGACAACCAAAGAGGCATCTGTTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTATTTGCTGGGGATTCTGTTCTTTTCATCAGAGATGAAAAACAGCAACTTCTTTTAGGTTTAAGGCGTGCTAATAGACAGCAGTCAGCGCTTTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTCGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGACGAGTCTGGAGTGCGCAGATATATGGGTACAATCACCGGGATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGACAGCTGGCGAGCGCCCAAGCAGAGTTTCAATTTGGGAAATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTTCCCAGGCAACCAGGAATGCCAGATGATGAGTCTGATATAGAAAGTGCATTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCGAGTTCAATTTTCCCTGGTTTGAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAGTCAGTTGTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTTCACCCAATACTCTGCATGGCAACCTTAGCACTGATGACCCATCCAAGTTATTGAGCTTTCAAGCTCCCGTCATCTCTACACCAAATCTTCAATTTAACAAACCTAATTTACCAAATCAAATCAATCAATTGCAACAGTCCACAGCATCATGGCCTCAACAGCTGCAGCATCAACAGCATCAACAACAGCTGCAGCAGCAACAACAGCAACAACAGCAACAGCTACAGCAACAACACCAGCAGCAGCAACACCAGCAGTTGCAGCAGCAGCAACAGCAACAACAGCAGCAGCTGCATTCATTATTGCAAATACCAACAAACCAGCTCCAGCAGCAGAGGCAACAGCAGCTACCTGAACCACAAAACCTGCCATTGCTACAGAAACAACTGCCTCAGCAGCTAGGACAGCTGCCACAGAAGCAGCAACAGCCATGTCAGCCTGCTATTATGAATAATGGTGTAGTTGCTTCTAACCAAATGACAAATCAGTTTGCACAGCAACCAGTAGCCTATGCTCAGCTTCAGCAACAGCAATTACTTTCAGGAGGTGTTGCACCCCAGCAAAGTATTCAGTCAGCTAGTAAGAATACATGCCCACTAACATCCCTACACCAAGACTCACAATTTCAGCAACATATAGACCAGCAAGCTAGTCTCTTACAAAGGCAGCAGCAACAGACACAGTTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGAGGGCGCCACAGCAGCCACCAGTGACTCAAATGTCACAGCAAAACCCCTCCGAGCAACAACTACACCTGCAGTTGCTACAATTGCAACAACAGCAGCAGCAGCAACAGCAACAGCAACTTCTTTCCACATCTAGTCCTCTTTTGCAGCCTCATCTTCTACAGCAACAAAATACTCACCAACAAAATCAGCAATTACCACAGATGCCTATATCTCAGCATCAAACACAACAGCTTGGAAATAATGCATTTTCAACAGAGAAGCTTCTCAACAGTAACAGCTTCTCTTCGGCTCTTGTGCAATCACAACAGCTTCCTGTGAACCAACCCCAAAATACACACAAATCACTTGCAATTACTAGAGCTCCCTCTACACTTACAGATGGAGATGCCCCATCATGCTCAACCTCACCATCTACTAATAACTGCCAGATATCTCCATCAAACCACCTAAAAAGAAATCAACAAGTACCAGCTACATTAGGGGGGAGTTTAGTAGTGGAGCCCACTAGTAATTTGATACAGGAGCTTCAGAGTAAGTCTGACATGCAGATCAAACATGAGTTCCCCAATGTAAAAGGGCCTGACCAGCTAAAGTATAAAGGGACAATTACTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGAAACGTCCAGCAGAACTTACCACTTTCCAACTTCTGCTTGGAAGGGGATGTCCAATCACACCCTAGAAACAGTCTACCATTTGACTCGAATCTTGATGGTCTAACACCTGATACTATGCTTTTAAGGGGGTATGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGTTGTCAACTGCTGACATCAGCTCACAGTCATTTGGAGTGCCAAACATACCTTTTAAGCCTGGTTGCTCAAGTGATGTTGGCATTAATGATACTGGGGTTTTGAACAATGGCTTGCGGGCTAACCAAACACAACGAATGCGAACTTATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGGTATGATGAACTCCGGCATGATTTGGCCCGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGACTGGAAATTGGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAAAGCATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGAACAGACAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCAGCCTCATTTAATAGGTACAGCAGTGTTGATTAG 3453 0.4434 MKAPSNCYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDYTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQSALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETDESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIESAFKRAMPWLGDDFGMKDASSSIFPGLSLVQWMSMQQNSQLSAAQSGCFPSMLSPNTLHGNLSTDDPSKLLSFQAPVISTPNLQFNKPNLPNQINQLQQSTASWPQQLQHQQHQQQLQQQQQQQQQQLQQQHQQQQHQQLQQQQQQQQQQLHSLLQIPTNQLQQQRQQQLPEPQNLPLLQKQLPQQLGQLPQKQQQPCQPAIMNNGVVASNQMTNQFAQQPVAYAQLQQQQLLSGGVAPQQSIQSASKNTCPLTSLHQDSQFQQHIDQQASLLQRQQQQTQLQQSPLQLLQQNLPQRAPQQPPVTQMSQQNPSEQQLHLQLLQLQQQQQQQQQQQLLSTSSPLLQPHLLQQQNTHQQNQQLPQMPISQHQTQQLGNNAFSTEKLLNSNSFSSALVQSQQLPVNQPQNTHKSLAITRAPSTLTDGDAPSCSTSPSTNNCQISPSNHLKRNQQVPATLGGSLVVEPTSNLIQELQSKSDMQIKHEFPNVKGPDQLKYKGTITDQLEASSSGTSYCLDPGNVQQNLPLSNFCLEGDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNIPFKPGCSSDVGINDTGVLNNGLRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGQYDDNSAASFNRYSSVD* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05109 1150 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Rops2g05109 1150 FunFam Auxin response factor 124 228 - -
Rops2g05109 1150 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Rops2g05109 1150 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops2g05109 1150 FunFam Auxin response factor 1013 1107 - -
Rops2g05109 1150 FunFam Auxin response factor 289 361 - -
Rops2g05109 1150 Coils Coil 701 721 - -
Rops2g05109 1150 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 568 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops2g05109 1150 Pfam AUX/IAA family 1013 1104 IPR033389 -
Rops2g05109 1150 CDD B3_DNA 125 217 IPR003340 GO:0003677
Rops2g05109 1150 Coils Coil 497 544 - -
Rops2g05109 1150 SMART B3_2 126 228 IPR003340 GO:0003677
Rops2g05109 1150 Gene3D - 124 227 IPR015300 -
Rops2g05109 1150 ProSiteProfiles PB1 domain profile. 1018 1111 IPR000270 GO:0005515
Rops2g05109 1150 Gene3D - 1013 1107 - -
Rops2g05109 1150 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Rops2g05109 1150 SUPERFAMILY CAD & PB1 domains 1031 1096 - -
Rops2g05109 1150 MobiDBLite consensus disorder prediction 682 702 - -
Rops2g05109 1150 MobiDBLite consensus disorder prediction 806 831 - -
Rops2g05109 1150 Gene3D - 289 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05109 Rops-Chr2 91645371 91653889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05109 1 486 B3 DNA Binding Superfamily AT5G20730 82.222 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops2g05109 AUX_IAA 1.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05109 K14486 - gmx:100816054 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05109 2 91645371 91653889 Rops2g05109 2 91645371 91653889 ECH