Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05087 ATGGCATTTCAAGATTTTGATCTCATTTCAGAACGGCGAAGAAATGAGAAGAAACAAAAGCTGAGGAAGAGGATCCTCATTGGTGTCGTTGCTGCAGTTGTCCTTGTTGGTCTTATAGGTGCTGCATTCTTTGTTGCTACCACAAAATATGGTGTTGGTAAGGAGGAGAATAACAAAGCTGCTCCAGCTACTTCTTCTAGCTCCAAGCATGTTACTCATTCAGAAAAGATGGTGAAATTGGTATGCAGCACTGCAGACTACAAAGACAAATGTGAAGGCCCTCTCAGCAAGGCAATGCAAGATGACCCCAAATTGACACATCCAAAAGACCTCCTCAATTATTATGTAAAATTGGCTGAAGATGAGGTTAGCAAGGCCTTCAACAAAACCAACTCCTTCAAGTTTGAATCTGATAAAGAAAAAGGAGCATTTGAGGATTGCAAGCAGCTATTTCAGGATGCCAAGGATGACTTGGAAACATCCATCTCTGAACTTGGAAAAATAGAATTCAAGACACTTTCCTCAAGGACTCCTGATTTTAAGAGTTGGCTGAGTGCAGTCATCTCTTTCCAACAAACATGTGTTGATGGTTTCCCAGAAGGAAAATTGAAGAATGATCTTCAAGATCTCTTCAAGGATTCCAAGGAATTCATTAGCAATTCCCTTGCCATTGTGTCTGAGGTATCCACATTCGTTTCTACAGTGCAGACACTTGCACGTAGCCGTTTGTTGCTGTCAGAGGATTCCAACTCCCCAGTTGATTCTCTAGACAAAGATGATGGCTTTCCCACTTGGGTTCACCCCGATGACAGAAGGGTGTTGAAGGCTGCAGATTTCAGACCCACACCTAATGTCACAGTGGCAAAAGATGGCAGTGGAAACTTCAAAACCATCTCTGAAGCTTTAGCAGCCATCCCTCAAAATTATCAAGGAAGGTACGTGGTTTATGTTAAGGAAGGAATATACGATGAGACAGTGACAGTATCAAAGAAACAACAAAATATAACCATGTATGGTGATGGATCTCAAAAGAGCATCATCACTGGCAGCAAAAACTTCAGGGATGGAGTCAGAACCTTCCAAACCGCAAGTTTTGCGGTTCTTGGAGATGGATTTTTGGGCCTGGCAATGGGATTCAGAAACACTGCTGGCCCTGAAGGGCATCAAGCAGTGGCTGCCAGAGTTCAAGCAGATCGTGCTGTGTTTGCTAACTGTCGCTTTGAGGGCTACCAAGACACTCTATACACTCAAACTCACAGACAGTTCTACCGTAGTTGCATCGTTGCAGGCACAATTGACTTCATCTTTGGTGATGCAGCTGTGGTATTCCAAAACTGCATCATGACTGTTAGGAAACCAATGGACAATCAGCAGAACATGGTCACTGCTCAAGGGAGAATGGACAAGCAACAAGCCACTGGAATTGTTTTGCAAAAATGTACCATCAAAGCTGATGACTCACTGGTTCCTGTGAAAGGCACAATAAGGAGCTACCTTGGTAGGCCATGGAAGGAGTACTCAAGAACCATTGTTATGGAATCTGAAATAGGTGACTTCATTCACCCTGATGGGTGGACACCTTGGATGGGAAACTTTGCACTCAACACACTGTATTATGCTGAGTATGGCAACACAGGACCTGGTGCTAGCACTGCTGCTAGGGTCAAGTGGCCTGGTTACAAAGGTGTTATTAGCAAGGAGGAGGCTAACAGGTTCACTGTGGGGACTTTCTTGAAGGGCACTTGGGTTCAGGGCTCAGGTATTCCATCAGTGCAGGGATTCTACAATTGA 1791 0.4417 MAFQDFDLISERRRNEKKQKLRKRILIGVVAAVVLVGLIGAAFFVATTKYGVGKEENNKAAPATSSSSKHVTHSEKMVKLVCSTADYKDKCEGPLSKAMQDDPKLTHPKDLLNYYVKLAEDEVSKAFNKTNSFKFESDKEKGAFEDCKQLFQDAKDDLETSISELGKIEFKTLSSRTPDFKSWLSAVISFQQTCVDGFPEGKLKNDLQDLFKDSKEFISNSLAIVSEVSTFVSTVQTLARSRLLLSEDSNSPVDSLDKDDGFPTWVHPDDRRVLKAADFRPTPNVTVAKDGSGNFKTISEALAAIPQNYQGRYVVYVKEGIYDETVTVSKKQQNITMYGDGSQKSIITGSKNFRDGVRTFQTASFAVLGDGFLGLAMGFRNTAGPEGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIVAGTIDFIFGDAAVVFQNCIMTVRKPMDNQQNMVTAQGRMDKQQATGIVLQKCTIKADDSLVPVKGTIRSYLGRPWKEYSRTIVMESEIGDFIHPDGWTPWMGNFALNTLYYAEYGNTGPGASTAARVKWPGYKGVISKEEANRFTVGTFLKGTWVQGSGIPSVQGFYN* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05087 596 SMART PMEI_2 73 224 IPR006501 GO:0004857
Rops2g05087 596 Pfam Pectinesterase 284 580 IPR000070 GO:0030599|GO:0042545
Rops2g05087 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 227 IPR035513 -
Rops2g05087 596 Pfam Plant invertase/pectin methylesterase inhibitor 77 224 IPR006501 GO:0004857
Rops2g05087 596 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Rops2g05087 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 229 IPR035513 -
Rops2g05087 596 NCBIfam pectinesterase inhibitor domain 64 227 IPR006501 GO:0004857
Rops2g05087 596 SUPERFAMILY Pectin lyase-like 281 588 IPR011050 -
Rops2g05087 596 PANTHER PECTINESTERASE 36 584 - -
Rops2g05087 596 CDD PMEI-like_3 80 230 - -
Rops2g05087 596 Gene3D - 279 594 IPR012334 -
Rops2g05087 596 FunFam Pectinesterase 279 594 - -
Rops2g05087 596 FunFam Pectinesterase 74 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05087 Rops-Chr2 91229489 91231951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05087 1 596 Carbohydrate Esterase AT4G33230 47.805 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05087 - - gmx:100784679 926.391