Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops2g05085 | ATGGCTCTCTTTTCAACAAAACTCACTGCCACATTCATCTTCTTCCTCCTGCTTCTCTGCACTGTCACAGCAGCTTCCCCTGCTGATTTCTCAGGTTCAGCATGCCTCAAAGTTTCTCCAACCCAATTCGTAGACTCAGCGAGAGCAGTCATCCACATTCTCCAACAAGTCACATCCATTTTATCACAGTTCAAAAGCTTCCTCAACTTTCGTCTTTCAAACGCCATTTCTGATTGCCTCGATTTACTTGACACCTCCTCTGACGAACTTTCATGGTCCGTTTCCGCTACCCAGAATCCAACAGGGAAGCATAACAGTACTGGGAACCTAAGTTCTGACTTGAGAACATGGCTAAGTGCTGTACTTGTAAATCCTGAAACATGCATGGAGGGATTTGAAGATTCCGACCTTCTACCCTCAGTTAGCACCACACAAACTTACCTTGGAAGACCCTGGAAGACTTACTCAAGAACCATTTTCATGCAATCTTACATGAGTGACATGATAAGGCCAGAAGGGTGGTTAGAATGGAATGGAAATTTTGCTTTGGACACGTTGTACTATGCTGAGTACATGAACTCTGGACCAGGTGCTGGAGTAACTAACCGAGTGAAATGGCCAGGGTTCCATGCATTGAATGAATCTAGCCAAGCTAGTAACTTCACAGTGTCTCAATTTATTGAGGGGAATCTATGGTTACCTTCCACAGGTATAGCATACACTGCTGGATTGACAGTTTAA | 741 | 0.4426 | MALFSTKLTATFIFFLLLLCTVTAASPADFSGSACLKVSPTQFVDSARAVIHILQQVTSILSQFKSFLNFRLSNAISDCLDLLDTSSDELSWSVSATQNPTGKHNSTGNLSSDLRTWLSAVLVNPETCMEGFEDSDLLPSVSTTQTYLGRPWKTYSRTIFMQSYMSDMIRPEGWLEWNGNFALDTLYYAEYMNSGPGAGVTNRVKWPGFHALNESSQASNFTVSQFIEGNLWLPSTGIAYTAGLTV* | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops2g05085 | 246 | Gene3D | - | 130 | 246 | IPR012334 | - | |
| Rops2g05085 | 246 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 54 | 140 | IPR035513 | - | |
| Rops2g05085 | 246 | CDD | PMEI-like_4 | 11 | 134 | - | - | |
| Rops2g05085 | 246 | Pfam | Pectinesterase | 134 | 230 | IPR000070 | GO:0030599|GO:0042545 | |
| Rops2g05085 | 246 | SUPERFAMILY | Pectin lyase-like | 133 | 243 | IPR011050 | - | |
| Rops2g05085 | 246 | Pfam | Plant invertase/pectin methylesterase inhibitor | 36 | 141 | IPR006501 | GO:0004857 | |
| Rops2g05085 | 246 | PANTHER | PECTINESTERASE | 22 | 137 | - | - | |
| Rops2g05085 | 246 | SMART | PMEI_2 | 26 | 165 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops2g05085 | Rops-Chr2 | 91209192 | 91212955 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops2g05085 | 134 | 244 | Carbohydrate Esterase | AT3G43270 | 74.775 | 4.22e-58 | 191 |