Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05078 ATGGGCTTCTATGCTGAGGACCCTATGTCTGGTTTCACAATAGGTCAAGCTATATATGAAGCAGCTCTAATCATTGCAGTTCTGAGATGGGTCTTGTGCTTGGTTTTTAGAGTGATCAGAGATAGAAGAACTCGTTCTCTTCACAACCCACATGAGATGATAAGTGCCAACACTCTTCCTTTGACCACCTTTGGTGAGATGTTGGAGAGGCTTCCGGAAACTGAAGACACTTGTGCTGTTTGCTTGAACCAGCTGAACATTCAAGATGAGGTTAGGGAACTCATGAACTGTTACCATGTGTTCCATAGGGAATGCATAGATAGATGGTTGGAGCATGATCATGACCATGACAATGAATACCATAACCCCACTTGTCCACTTTGTAGAGCCCCTTTGCTTAGTTCTTATTCTCTTTCATCAGAGAGTTCAAGCTGTGTGCCTCCCCCTCAGCCTAGTTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGAGATGATCTATTGCCTTATTAG 510 0.4412 MGFYAEDPMSGFTIGQAIYEAALIIAVLRWVLCLVFRVIRDRRTRSLHNPHEMISANTLPLTTFGEMLERLPETEDTCAVCLNQLNIQDEVRELMNCYHVFHRECIDRWLEHDHDHDNEYHNPTCPLCRAPLLSSYSLSSESSSCVPPPQPSWAVERLLYLFGDDLLPY* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05078 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 144 IPR013083 -
Rops2g05078 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 167 - -
Rops2g05078 169 SMART ring_2 78 128 IPR001841 -
Rops2g05078 169 SUPERFAMILY RING/U-box 72 136 - -
Rops2g05078 169 Pfam Ring finger domain 76 129 IPR001841 -
Rops2g05078 169 ProSiteProfiles Zinc finger RING-type profile. 78 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05078 Rops-Chr2 91079098 91079828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05078 1 166 C3H Transcription Factor Family AT5G20885 45.304 7.65e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05078 K16281 - gmx:100306203 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05078 2 91079098 91079828 Rops2g05078 2 91079098 91079828 ECH