Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g05070 ATGGAAGTGATCACTGGTAGCAAGATTTCGAAGGGAATGTTTCCACTTCTTGCTCTTCACACTTTCATTGCGTACGACAGAACGGAGGGAAAGTCCCCCGTCACCGCCGCCCTTATCGCCACCAACACTCTCATTTATCTCCGACCACCTTTGCTGAACTCTCTCATTCCCTCTATCGATCAAGTCTGGTTCAATCCCCACCTCATCCTTGAGAACAATGACCTGAAGCGGTTTTTCTTGTCGGTGTTCTACCATACTGGAGAACCCCACCTCGTTTACAACATGACATCGCTTCTGTGGAAAGGGATTCATTTGGAAACCAAAATGGGAAGTGTGGAATTTGCTTCCATGGTTGCTTCATTGCTTGCTTTGTCTCAGGGTATCACTCTAATGCTATCCAAGACTTTGCGTCTGTTTTACTACAACGAATGTCCCATTGGCTTCTCTGGCGTCCTGTTTGCAATGGAAGTCGTTCTCAATTCTCAATCAACAAGTCATTATACTTACTTGCATGGAGTGATAGTGAACTCTCGTGATGCTGCTTGGGCTGAATTGCTTCTTCTCCAAATGTTTGCACCTGGTGTTTCCTTTTTTGGTCATCTTGGTGGCATACTTGCCGGCCTTCTCTATATGAGATTGAGACGCTGTTATTCAGGATCAGACCCTTTAACTTTTCTCATTAGAGGTGTCAATGCTGCATTCAACTGGACTCTCATGTTTTCGCGTGTGTTGTTTCGATTTTGGCGGAGAGGTATCAATGCTGCAGTCAACTGGACTCTCAAGTTTTCACGTGACTTGTTTCGATATTGTCGGGGAATGATATCCGGTAGGGGAACTAGAGGTGGTAACCAGACGGGAAGAACTACTGCTCAGTCTGCTTTTTGGAGGTGCCAGGCATGCACGTATGATAACCACGGTTTGTTAAGTGTGTGTGAGATATGTGGTACCAGAAGGGATGGGGATATATTATCTTCTTTTCAATTGAATGGTGGTTCTCATCTCCTTTCTTTGGATGGATTAGGTCGCCAGAGAATTGACATATTAGGTAGCCCAGAGGTCAAAGAGTTGCAGTCCAAGAAGAGGAAATTTTTTATAAAGCCACCTGAGCCTCCAAAGGAGCCAGTCTTCTTCAAATGTCCAATATGTATGGGCCCTTTTGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGGGTTCGGGGTAAATGTCCTACCTGTAGAAAAAATATTACCGTGGAAGATCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 1305 0.4437 MEVITGSKISKGMFPLLALHTFIAYDRTEGKSPVTAALIATNTLIYLRPPLLNSLIPSIDQVWFNPHLILENNDLKRFFLSVFYHTGEPHLVYNMTSLLWKGIHLETKMGSVEFASMVASLLALSQGITLMLSKTLRLFYYNECPIGFSGVLFAMEVVLNSQSTSHYTYLHGVIVNSRDAAWAELLLLQMFAPGVSFFGHLGGILAGLLYMRLRRCYSGSDPLTFLIRGVNAAFNWTLMFSRVLFRFWRRGINAAVNWTLKFSRDLFRYCRGMISGRGTRGGNQTGRTTAQSAFWRCQACTYDNHGLLSVCEICGTRRDGDILSSFQLNGGSHLLSLDGLGRQRIDILGSPEVKELQSKKRKFFIKPPEPPKEPVFFKCPICMGPFVEEMSTRCGHIFCKNCIKAAIRVRGKCPTCRKNITVEDLIRVFLPSTS* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g05070 434 SMART zf_4 293 317 IPR001876 -
Rops2g05070 434 SMART ring_2 379 416 IPR001841 -
Rops2g05070 434 SUPERFAMILY RING/U-box 378 422 - -
Rops2g05070 434 SUPERFAMILY Rhomboid-like 32 213 IPR035952 -
Rops2g05070 434 ProSiteProfiles Zinc finger RING-type profile. 379 417 IPR001841 -
Rops2g05070 434 FunFam Rhomboid-like protein 14, mitochondrial 27 218 - -
Rops2g05070 434 Gene3D - 26 218 IPR035952 -
Rops2g05070 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 432 IPR013083 -
Rops2g05070 434 SUPERFAMILY Ran binding protein zinc finger-like 292 318 IPR036443 -
Rops2g05070 434 Gene3D - 288 328 - -
Rops2g05070 434 Pfam Zinc finger, C3HC4 type (RING finger) 378 416 - -
Rops2g05070 434 PANTHER RHOMBOID-RELATED PROTEIN 10 306 - -
Rops2g05070 434 ProSitePatterns Zinc finger RanBP2-type signature. 295 314 IPR001876 -
Rops2g05070 434 ProSitePatterns Zinc finger RING-type signature. 394 403 IPR017907 -
Rops2g05070 434 Pfam Rhomboid family 71 213 IPR022764 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g05070 Rops-Chr2 90887491 90893868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g05070 331 433 C3H Transcription Factor Family AT3G07200 49.074 4.55e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g05070 K09651 - mof:131166171 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g05070 2 90887491 90893868 Rops2g05070 2 90887491 90893868 ECH